BAC Information

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BAC

Clone NameMSMg01-184K12
Chromosome2 (Build37)
Map Location 9,957,565 - 9,957,840
singlet/doubletsinglet
Overlap geneTaf3
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik
Downstream geneAtp5c1, Kin, Itih2, Itih5, Sfmbt2, LOC100040690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184K12.T7 (MSMg01no184_k12.b1)MSMg01-184K12.TJ (MSMg01no184_k12.g1)
ACCAG376876AG376877
length715690
length of high quality
(start - end)
308 (63 - 370)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no184_k12.b1 PHD_FILE: MSMg01no184_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:07 2005CHROMAT_FILE: MSMg01no184_k12.g1 PHD_FILE: MSMg01no184_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTGTTTTNNNTTGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTTGCTCAGAGCATTCTGGGTGAAGCT
GCAGGAAAGAAGAGACTCAAATTGTCTGGAGGAATCTCAGATGGCTCAGC
AGGTAAGAGCACTGACTGCTCTTCCAGAGGTTATGAGTTCAAATCCCAGC
AACCACATGGTGGCGCACAACCATCCGTAATGAGATCCAATGCCCTCTTC
TGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAGTAAATGAA
TCTTAAAAACAAACAAACAAACAAACAAACAAACAAAAACTCAAGTTCTG
AACTCGGGAGGATAAGTCTTATTTTGAACGCACACCCCCCATCAGACATG
GGGGACCAGACAAGGGAGGCCATTCCAGCCCACACACGAATGGTTCACTG
AGCTCTTTGGCTCACTGTACTCCTTCCTAAAACTGGAAAGAGATACAAAT
ATTGAGCCAGAAAAGCTTCACTCCACATTAGGCAGATCAAATGAAAAAGA
AGTGACAGCAAAACCCATTGAAGTAAAAACTTCAGAACGTCTGATGGAAG
AAACATGGGGCAGGAATGGGATTAGATCACTTTCATTAGTAAAACCAGAT
TTGATTACGAAAGACTTTGGAGGAATAACTCATAATTCAAAGGGAAAGTT
TTGGGGATTTTTCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCGAAAACAACTCTATAACCAAGTTT
TATCCATGAACCCTGTGCTGTCCCACCTGTGCTCCTTCCTGGGGTCATTC
TGATGGCTGCAAGGAGGTCTACAGGTATTGGGGGTACAGCACCCCTGGAG
TCCTCCCTCTCAACTGAACCATCTCACCCCCATACTTAAAAAAACAAATA
ACCTTCGTTTTTATTGTACAGTAAGTTAAAAAAGGACTACTGGTACTTAT
AGTTTGGGCACATACTTCGTTTTCCCTCAAATCCAACTTATAACTTAAAG
TAATACTTTTATTCTAACCTTTCGACAGCACTGGGAAAGCTAACGAAGTA
AAAGGAAAGATCCAGATAAAAGCATGGGTGGGGAACAGGGATGGAAAGGT
TACACAAAAGCAACAGAAGAGGGTGCACTGTGGAGCGGAGAACGACCTTG
AGCTACCTTATGATTTTTAGAAGGCTTTTTTTTTTTTTTTTTTTTTTCCC
TTTTTTCCCCAAGACAGGTTTTCTCTGTGAAGCCCTGGCTGTCCTGAAAC
TCACTCTGGAAACCAGGTTGGCCTCGAACTCAAAAATCCGCCTGCTTCTG
CCTCCCGAGTGTTGTGATTAAAGGCGTGTGCCTACCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_k12.g1 MSMg01no184_k12.g1 CHROMAT_FILE:
MSMg01no184_k12.g1 PHD_FILE: MSMg01no184_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:07 2005
         (284 letters)



>mm_chr2_9957365_9958042
          Length = 678

 Score =  451 bits (233), Expect = e-131
 Identities = 268/285 (94%), Gaps = 12/285 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgaaaacaactctataaccaagttttatccatgaaccctgtgctgtcccacctgtgctc 60
           |||| ||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 201 tcgagaacaactctataaccaagttttatccatgaaca------tgtcccacctgtgctc 254

                                                                       
Query: 61  cttcctggggtcattctgatggctgcaaggaggtctacaggtattgggggtacagcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cttcctggggtcattctgatggctgcaaggaggtctacaggtattgggggtacagcaccc 314

                                                                       
Query: 121 ctggagtcctccctctcaactgaaccatctcacccccatacttaaaaaaacaaataacct 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caggagtcctccctctcaactgaaccatctcacccccatacttaaaaaaacaaataacct 374

                                                                       
Query: 181 tcgtttttattgtacagtaagttaaaaaagga---ctactggtacttatagtttgggcac 237
           |||||||||||||||||||||||||||||  |   |||||||||||||||||||||||||
Sbjct: 375 tcgtttttattgtacagtaagttaaaaaa--aaaactactggtacttatagtttgggcac 432

                                                        
Query: 238 atacttcgttttccctcaaatccaacttataacttaaagtaatac 282
           ||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 433 atatttcgttt-ccctcaaatccaaattataacttaaagtaatac 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 678
Length adjustment: 9
Effective length of query: 275
Effective length of database: 669
Effective search space:   183975
Effective search space used:   183975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)