Query= MSMg01no184_p06.b1 MSMg01no184_p06.b1 CHROMAT_FILE:
MSMg01no184_p06.b1 PHD_FILE: MSMg01no184_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:32 2005
(560 letters)
>mm_chr2_28814963_28815922
Length = 960
Score = 971 bits (502), Expect = 0.0
Identities = 530/552 (96%), Gaps = 20/552 (3%)
Strand = Plus / Plus
Query: 5 gaattctgatgctggcttgccactttctgaatgtctactctgtgctaaggcaggggactc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgatgctggcttgccactttctgaatgtctactctgtgctaaggcaggggactc 264
Query: 65 gtgacattattcaccaaaacatactacctcagcctctcaaaaggaaggacacacccagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgacattattcaccaaaacatactacctcagcctctcaaaaggaaggacacacccagga 324
Query: 125 agctcgtccagccctcacagctgccacccttcatccttgaggtgggacctgcgttccagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctcgtccagccctcacagctgccacccttcatccttgaggtgggacctgcgttccagg 384
Query: 185 aaggatgctctgccttctgccgcagggccctgagctcctctgaagggctgctttcctata 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 aaggatgctctgccttctgccgcagggccctgagcccctctgaagggctgctttcctata 444
Query: 245 ggaggaaaggtcctccatgtctctgaaaacgcagggcacagaggagattctgaatacata 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 ggaggaaaggtcctccatgtctctgaaaacgcagggcacagaggagattctgaacacata 504
Query: 305 gacctttaaaaatctccatctgaccatattctgtctacacctctttcccaggatggccca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacctttaaaaatctccatctgaccatattctgtctacacctctttcccaggatggccca 564
Query: 365 tcatctcctcaaacccaatatgaaaatatgcaggcctgtttctttgagtcttcatttctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatctcctcaaacccaatatgaaaatatgcaggcctgtttctttgagtcttcatttctt 624
Query: 425 tgggaaaattcctgagtcaggggaagtcctcattttaaatattttatctgatatttcttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgggaaaattcctgagtcaggggaagtcctcattttaaatattttatctgatatttcttc 684
Query: 485 tctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtg 544
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 tctctctctctctctctctctctct--------------------gtgtgtgtgtgtgtg 724
Query: 545 tgtgtgtgtgtg 556
||||||||||||
Sbjct: 725 tgtgtgtgtgtg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_p06.g1 MSMg01no184_p06.g1 CHROMAT_FILE:
MSMg01no184_p06.g1 PHD_FILE: MSMg01no184_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:32 2005
(247 letters)
>mm_chr2_28929349_28929995
Length = 647
Score = 435 bits (225), Expect = e-126
Identities = 241/247 (97%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 1 actatgtaggccagactggccttaaattcacagagatctgcttgcctctgtctcccaagt 60
|||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 540 actatgtaggccagactggccttaaatt--cagagatctgcttgcttttgtctcccaagt 483
Query: 61 gctgggattaaaggtgtgttccactctacccagtttaaggcccaacattctggggcaaag 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gctgggattaaaggtgtgtcccactctacccagtttaaggcccaacattctggggcaaag 423
Query: 121 tggccacacatctcactcccccaggctccctcctggccaacttctggaaggaccggcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tggccacacatctcactcccccaggctccctcctggccaacttctggaaggaccggcatg 363
Query: 181 cgcagcagttcatgcagcagggtatggactgaggcatggttagtgcacacagagaagtca 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cgtagcagttcatgcagcagggtatggactgaggcatggttagtgcacacagagaagtca 303
Query: 241 aaggaac 247
|||||||
Sbjct: 302 aaggaac 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
