Query= MSMg01no185_b07.b1 MSMg01no185_b07.b1 CHROMAT_FILE:
MSMg01no185_b07.b1 PHD_FILE: MSMg01no185_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:42 2005
(284 letters)
>mm_chr2_169457774_169458457
Length = 684
Score = 485 bits (251), Expect = e-142
Identities = 275/295 (93%), Gaps = 20/295 (6%)
Strand = Plus / Minus
Query: 1 cgctctcacacacaagcactctcgcttacacacacacacacacac------------aca 48
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 634 cgctctcacacacaagcactctcgcttacacacacacacacacacacacacacacttaca 575
Query: 49 ctcacactccccacatatgctctctcttacacacacacacacacacacacacacacacac 108
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 574 ctcacactccccacatatgctctctctt--------acacacacacacacacacacacac 523
Query: 109 acacacacacacacacacacacacactcacacacacacaagacagggcgaggcgatgcca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acacacacacacacacacacacacactcacacacacacaagacagggcgaggcgatgcca 463
Query: 169 gcaaacatcgatcccggctgaacaaactgaacattaacaaactcctcctcttctccctgc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gcaaacatcgatcccggctgaacaaactgaacattaacaaactcctcctcttctccctgc 403
Query: 229 gacctgatgacagggagaaatttactccccagccgcagagcgccaggcagaggga 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gacctgatgacagggagaaatttactccccagccgcagagcgccaggcagaggga 348
Score = 60.7 bits (31), Expect = 1e-13
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 107 acacacacacacacacacacacacacactcacaca 141
|||||||||||||||||||||||||||| ||||||
Sbjct: 684 acacacacacacacacacacacacacac-cacaca 651
Score = 60.7 bits (31), Expect = 1e-13
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 99 acacacacacacacacacacacacacacacacaca 133
|||||||||||||||||||||||||||| ||||||
Sbjct: 684 acacacacacacacacacacacacacac-cacaca 651
Score = 58.7 bits (30), Expect = 4e-13
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 101 acacacacacacacacacacacacacacacacac 134
|||||||||||||||||||||||||||| |||||
Sbjct: 684 acacacacacacacacacacacacacac-cacac 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 192
Number of extensions: 61
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 4
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no185_b07.g1 MSMg01no185_b07.g1 CHROMAT_FILE:
MSMg01no185_b07.g1 PHD_FILE: MSMg01no185_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:42 2005
(474 letters)
>mm_chr2_169310149_169311022
Length = 874
Score = 783 bits (405), Expect = 0.0
Identities = 438/449 (97%), Gaps = 2/449 (0%)
Strand = Plus / Plus
Query: 1 tgtcacttttatgggccagagtgattaatttgtttgtttggttccctcaattaaggccac 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgtcacttttatgggccagagtgattaatttgtttgtttgggtccctcaattaaggccac 260
Query: 61 aaacagagtgaggtgtcgggagcaagttagcagtgtcgtctggcacggagcagtcaactg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaacagagtgaggtgtcgggagcaagttagcagtatcgtctggcacggagcagtcaactg 320
Query: 121 ccgtggagaagcagaggcttgagtggctgcccataaccttgagccttagcaccgcaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ccgtggagaagcagaggcttgagtggctgcccataaccttgagccttagcaccacaccag 380
Query: 181 gcccaccctacctggggttagcgtctgatgtccctctattaatagttctaagcttgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccaccctacctggggttagcgtctgatgtccctctattaatagttctaagcttgtttt 440
Query: 241 tactgataacccctttcactgcccagctacgctggagaagcctgggttagagttagcagg 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactgataacccttttcactgcccagctacgctggagaagcctgggttagagttagcagg 500
Query: 301 gccatcccgatattttcctgggctatctaattattttgaccccaatttgatgagatgtag 360
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 501 gccatcccgatattttcctgggctatctaattattttgaactcaatttgatgagatgtag 560
Query: 361 aaaagaaataaacccatgagccatttaccttgctagggagatggctcactttgtttgtga 420
|||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct: 561 aaaagaaataaacccatgagccatttaccttgctagagagatggctccctttgtctgtga 620
Query: 421 aaatcaaaatcaaaat-aataataataat 448
|||||||||||||||| || |||||||||
Sbjct: 621 aaatcaaaatcaaaatcaa-aataataat 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
