BAC Information

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BAC

Clone NameMSMg01-185K10
Chromosome2 (Build37)
Map Location 48,455,747 - 48,456,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185K10.T7 (MSMg01no185_k10.b1)MSMg01-185K10.TJ (MSMg01no185_k10.g1)
ACCAG377579AG377580
length707752
length of high quality
(start - end)
309 (36 - 344)289 (87 - 375)
definitionCHROMAT_FILE: MSMg01no185_k10.b1 PHD_FILE: MSMg01no185_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:24 2005CHROMAT_FILE: MSMg01no185_k10.g1 PHD_FILE: MSMg01no185_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTA
GTGGTAATTAAGGTGTAAATCTTTAGCATGTGGTACCTAAACTTAGAAAT
AAGTGACTGTCCTGACCTCTTACTGATCACAGAGCACTTACAGGTGATGT
TATACTGGACAGTACTTCAACAGCTTCTCATGATGTGTGCTGAAGGAACT
GGGTCAATAATTGAGCCCTGGCCATAGCTAAGTCTAGGTAAAGGTGAAGG
TTGCTCTTTGGAGAAGAATGATAATTGGAGACTCTGCCTGCCTCTCCCAT
TTTCTAAATATGATTACCTTCCTCTCTGTTCAATTGCAAAGTTTCTTCTT
ATCCCCCCCCCCCTACAGCTTCTGATCTTGGAATGAAATCAATCAGCCCA
CCCCCGAAAAAAAAAAAAAGGGGTAGAAAGAGATTGGAGATGAATGTTGT
CTCTTGCAATGGACTTTTCCAAAAGAAGTACAGACTATGTGGAACGATCC
AGGCTCGTGCAAAGATAGATAGAAAAGTCTGGTCTCAAGACTGCCTTCCT
TCTGTGATTAGATCATCAATTTCTTGCTGCCTTTCCTTCATGTAATTTGT
TTAGTTATCAGGTAATACACTTGAAGTGTTACCCGAATCCTCTTTGGATT
GACTTTCATTGATCCCCAGGGCACAAACTGTATTTCTTGTTGTATTTTTT
ACCACCC
NTTTACTTTNNNNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCCTTTTGCATT
TTGTATTTTCTTTGACTGTTGTGTCGATGTTCTCTATGGAATCTTCTGCA
CCTGAGATTCTCTCTTCCATTTCTTGTATTCTGTTGCTGATGCTCGCATC
TATGGTTCCAGATCTCTTTCCTAGGGTTTCTATCTCCAGCGTTGCCTCGC
TTTGGGTTTTCTTTATTGTGTCTACTTCCCCTTTTAGTTCTAGTATGGTT
TTGTTCATTTCCATCACCTGTTTGGCTGTGTTTTCCTGCTTTTCTTTAAG
AGCCTGTAACTCTTTAGCAGTGCTCTCTTGTAAATCCCCACCGCGACTTA
TGAAAGTCCTTCTTGATGTCCTCTATCATCATCACGACAAATGTATTAAA
TCTGGGTCTAGATTTTCGGTTGTGTTGGGGTGCCCAGGACTAGCTGTTGT
GGAAGAGTTAGGTTCCAATGAGGGTAATTCACAGAGATACCTTTTTGATA
CACTTGTACGTTAGGTTTTTTTTTATATTTCCAAACTCTTAGTTTGTTTT
CATTTCCTTGCCATGTTTTTTTATTATTTGTTATAATTGGTACCTTCATC
ACATTGTATTTTTTTTTTTTTAATTTTCCATTCTTATAATATAGCCTTCT
GCCATTGTTACTCCTTGTTATTCTCCTCATTGCCTCCTCGACTTCCAACT
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_k10.b1 MSMg01no185_k10.b1 CHROMAT_FILE:
MSMg01no185_k10.b1 PHD_FILE: MSMg01no185_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:24 2005
         (309 letters)



>mm_chr2_48455541_48456249
          Length = 709

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctcttagtggtaattaaggtgtaaatctttagcatgtggtacctaaacttagaaata 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attctcttagtggtaattaaggtgtaaatctttagcatgtggtacctaaacttagaaata 447

                                                                       
Query: 67  agtgactgtcctgacctcttactgatcacagagcacttacaggtgatgttatactggaca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtgactgtcctgacctcttactgatcacagagcacttacaggtgatgttatactggaca 387

                                                                       
Query: 127 gtacttcaacagcttctcatgatgtgtgctgaaggaactgggtcaataattgagccctgg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtacttcaacagcttctcatgatgtgtgctgaaggaactgggtcaataattgagccctgg 327

                                                                       
Query: 187 ccatagctaagtctaggtaaaggtgaaggttgctctttggagaagaatgataattggaga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccatagctaagtctaggtaaaggtgaaggttgctctttggagaagaatgataattggaga 267

                                                                       
Query: 247 ctctgcctgcctctcccattttctaaatatgattaccttcctctctgttcaattgcaaag 306
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 266 ctctgcctgcctctcccattttctaaatatgattaccttcctctccgttcaattgcaaag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)