BAC Information

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BAC

Clone NameMSMg01-185M01
Chromosome2 (Build37)
Map Location 83,485,864 - 83,486,493
singlet/doubletsinglet
Overlap geneZc3h15
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
Downstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185M01.T7 (MSMg01no185_m01.b1)MSMg01-185M01.TJ (MSMg01no185_m01.g1)
ACCAG377645AG377646
length723719
length of high quality
(start - end)
328 (45 - 372)630 (84 - 713)
definitionCHROMAT_FILE: MSMg01no185_m01.b1 PHD_FILE: MSMg01no185_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:32 2005CHROMAT_FILE: MSMg01no185_m01.g1 PHD_FILE: MSMg01no185_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTACAATACTGAATGGCAGAGAAGCACCTGAAAAAAATGC
TCAACATCCTTAAGCATCAGGCAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATAGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAATATGCCCCCACTGCCCACAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGTGGCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AAGATACCCAAGATATAAGATACAATTTCCTAAACACATGCAACTCAAGA
AAAATGAAGACTGAAGTGGGAAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCTGCCTCTGCCCTT
CTGAGTGTCATCTCCACTGTCAGCTGACAAAAATTAACGAAACAAAAAAC
CCTTTAGTCTCATTAATTAAAAGTGGTTATAGGTCCAAGTGGCCTGAAAT
ACATTCTATAATGTTTTGTAACATTTATTTTTGAATGGAAATTTTACTGT
TTTGTGATCTATTTTATATTTATTCAATCTCAGTAGTTTGTAAGTAAAAT
GCTATTTCTGAATGTCCTTTGTTGGCACAATATTGAATTGCCACCAGATT
ATTATTCCCAGAGATTTAAGTCTCCCAAATCCTGATTTTTTTCTTCAGAT
GTAAAGGTGACAATTATTTTTCTTTCTTTTATTTTCCCTTGGACAAGAGT
TTCTCTGTGTGCTCTGGCCATTCTGTAGACCAGGCAAACTGTCTACTGAG
ATGAAAGGCACACACCAGCACTGCTTGGCAACAGTTTTGCTTCCAGATGT
TTGGCTACGGCAGTTCTACCTTAGAACTCCAACAGTCAGTAAATTATTAG
ATGTGTTCACATTAATTTTATTTAAATTAAATCAGCCAACTTTAACTACA
GACAATCTGACAAAAGATTAATCTCATTAGCGTGTATAAAGGAACCCTGG
CGAATTCTCACTTCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_m01.g1 MSMg01no185_m01.g1 CHROMAT_FILE:
MSMg01no185_m01.g1 PHD_FILE: MSMg01no185_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:32 2005
         (630 letters)



>mm_chr2_83485767_83486796
          Length = 1030

 Score = 1195 bits (618), Expect = 0.0
 Identities = 627/630 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacctgcctctgcccttctgagtgtcatctccactgtcagctgacaaaaattaacgaaac 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 727 tacctgcctctgcccttctgagtgtcatctccactgtcaggtgacaaaaattaacgaaac 668

                                                                       
Query: 61  aaaaaaccctttagtctcattaattaaaagtggttataggtccaagtggcctgaaataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaaaaaccctttagtctcattaattaaaagtggttataggtccaagtggcctgaaataca 608

                                                                       
Query: 121 ttctataatgttttgtaacatttatttttgaatggaaattttactgttttgtgatctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 607 ttctataatgttttgtaacatttatttttgaatggaaattttactgttttgtggtctatt 548

                                                                       
Query: 181 ttatatttattcaatctcagtagtttgtaagtaaaatgctatttctgaatgtcctttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttatatttattcaatctcagtagtttgtaagtaaaatgctatttctgaatgtcctttgtt 488

                                                                       
Query: 241 ggcacaatattgaattgccaccagattattattcccagagatttaagtctcccaaatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggcacaatattgaattgccaccagattattattcccagagatttaagtctcccaaatcct 428

                                                                       
Query: 301 gatttttttcttcagatgtaaaggtgacaattatttttctttcttttattttcccttgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gatttttttcttcagatgtaaaggtgacaattatttttctttcttttattttcccttgga 368

                                                                       
Query: 361 caagagtttctctgtgtgctctggccattctgtagaccaggcaaactgtctactgagatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caagagtttctctgtgtgctctggccattctgtagaccaggcaaactgtctactgagatg 308

                                                                       
Query: 421 aaaggcacacaccagcactgcttggcaacagttttgcttccagatgtttggctacggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaaggcacacaccagcactgcttggcaacagttttgcttccagatgtttggctacggcag 248

                                                                       
Query: 481 ttctaccttagaactccaacagtcagtaaattattagatgtgttcacattaattttattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttctaccttagaactccaacagtcagtaaattattagatgtgttcacattaattttattt 188

                                                                       
Query: 541 aaattaaatcagccaactttaactacagacaatctgacaaaagattaatctcattagcgt 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 187 aaattaaatcagccaactttaactacatacaatctgacaaaagattaatctcattagcgt 128

                                         
Query: 601 gtataaaggaaccctggcgaattctcactt 630
           ||||||||||||||||||||||||||||||
Sbjct: 127 gtataaaggaaccctggcgaattctcactt 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)