Query= MSMg01no185_n10.b1 MSMg01no185_n10.b1 CHROMAT_FILE:
MSMg01no185_n10.b1 PHD_FILE: MSMg01no185_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:39 2005
(313 letters)
>mm_chr2_137928765_137929480
Length = 716
Score = 549 bits (284), Expect = e-161
Identities = 305/316 (96%), Gaps = 8/316 (2%)
Strand = Plus / Plus
Query: 5 gaattccatgcatttattttgatcgtatctctactcctcaccctagctccttgcagatac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgcatttattttgatcgtatctctactcctcaccctagctccttgcagatac 264
Query: 65 actcccacctccatattcaatcttatatcatctctttatttttttt---ggtttttaatt 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 actcccacctccatattcaatcttatatcatctctttatttttttttttggtttttaatt 324
Query: 122 aaaaatagaattctttcatattccctcccccctttcttctctcttattttctgcattctg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaatagaattctttcatattccctcccccctttcttctctcttattttctgcattctg 384
Query: 182 accagttgtgagtctttgtattaatcttcatttactgtaaaaaaga-----cagttcctg 236
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 385 accatttgtgagtctttgtattaatcttcatttactgtaaaaaaaaaaaaacagttcctg 444
Query: 237 ggttagggttgattaatatataatctacggtataaagataagcatttatagcagtggtcc 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtgagggttgattaatatataatctacggtataaagataagcatttatagcagtggtcc 504
Query: 297 tcaagctgtgggctgt 312
||||||||||||||||
Sbjct: 505 tcaagctgtgggctgt 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 716
Length adjustment: 9
Effective length of query: 304
Effective length of database: 707
Effective search space: 214928
Effective search space used: 214928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_n10.g1 MSMg01no185_n10.g1 CHROMAT_FILE:
MSMg01no185_n10.g1 PHD_FILE: MSMg01no185_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:39 2005
(288 letters)
>mm_chr2_138011457_138012144
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%)
Strand = Plus / Minus
Query: 1 tcccagaagcagatttttatctacaaactagttgagagttattgctagaaaacatcaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcccagaagcagatttttatctacaaactagttgagagttattgctagaaaacatcaatt 603
Query: 61 ggaggttggaaaacagaaaactgaaaggaagatctagtaacatgtttatattccatcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggaggttggaaaacagaaaactgaaaggaagatctagtaacatgtttatattccatcaag 543
Query: 121 ttgcccccgctgtgggcaagtgaagcttaacattactgaggacctctgagaagttacaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 542 ttgcccccgctgtgggcaagtgaagcttaacattactgaggacctctgagaagatacaac 483
Query: 181 tgttggcccacctgttacggtttggatgtcaaatgtcccctcaaagttcaagtcttacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgttggcccacctgttacggtttggatgtcaaatgtcccctcaaagttcaagtcttacag 423
Query: 241 gcttgggcttctgtttggcactactggaaggaagtactttttaggaga 288
|||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 422 gcttggtcttcagtttggcactactggaaggcagtactttttaggaga 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
