BAC Information

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BAC

Clone NameMSMg01-186F14
Chromosome2 (Build37)
Map Location 98,390,129 - 98,390,358
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc4c, LOC621146, LOC664974
Downstream geneLOC100042886, LOC621386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186F14.T7 (MSMg01no186_f14.b1)MSMg01-186F14.TJ (MSMg01no186_f14.g1)
ACCAG378060AG378061
length795782
length of high quality
(start - end)
---235 (127 - 361)
definitionCHROMAT_FILE: MSMg01no186_f14.b1 PHD_FILE: MSMg01no186_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:18 2005CHROMAT_FILE: MSMg01no186_f14.g1 PHD_FILE: MSMg01no186_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACTACATATAAGCATGATGAAGAATTGAAAATAATCATTTTGA
AGAATTTCAATTTCACTAGAAAATACACTGTATTAATCTGGTTATTCTAA
AGTCACAGAACTTATGGAATGTCCCTCTAAATTGAGGAAATTTATCTTTT
ATGATTTACAGTCTGTAATCCAAATAACCCAACAATAGTCAGCTGTAAAT
GGTAAGTCCAAGAATCTAGTAGCTGCTCAGTCCCACAAGGCTAGTTGTTT
CATCTGATCTTCTGTACAAGTATATTCCCACAGATGTGCTGGCAAGTCAG
TGCAAACATTTTTTTTTTTAACCCCCACCCCCCCCTCTAATATCCTTATG
TAGGGTTCCAGCGCCCCCCCCCCCCTTCAAAAAAAAAATACTGCTCCGAC
GCTGTCTGTATATCGCTATTGCTCTTTGTATTATGATTGACTTTAATGCT
TCGACTACTTTTTTTACAACTGATTTCTTGTAATTATTTTTTATATTAAT
ATCTTTTTTTTGTGCTCGATATCTTTCCTATGAATTCTTTCTGATTATCT
ACCTTTTCCGTTCATATTTTTCCCCTTTTTATCTCTTTTTTTTTTTTCCA
TTTCTTTTTTTTTCTCCGCGTTTTTTATCCTATCTATCCTCTCTTTTCTT
TCCTCCTCGTCAATTCTGATTTGCGCCATTTTTCTCCTATTCCTCTCCTC
ATCCTTTGTCTTTTTTTAATTCTTTTATTGTCCCCCCTCTCTCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTATGACTAAGAGATGAACTA
CACTACCATGAAGGTATTTGTTCTTTATCAAAAGATATGTATATTCTAAT
AAAAATATGTAATCATGGTATAAAATGATTTCTTTTTAATTATGTAATAT
ACATCTTAGGCAACTTGCAAACATCTAATAAATTTATGCCTTCTGAGTGG
GCATGAAAGAGTATATTATTAATCATTTGAAAGTAACCTGATTATTAAAT
TATACATTACATTTTAAAATATATTTTTATTAGGTATTTTCCTCATTTAC
ATTTCCTTTGNTTTCTTCCCCGAACTANCCCCCCTCNCCCCCATTCCCCT
AACCACCCAGTGCCCCCCCCAAAAAAAAAAAAAAAACCTGTTCTGGGGCA
TATAAAGTTTTCAAGACCAATGGGTCTCTCTTTCCAGCGATGTCCAACTA
GGCTATTTTTTGATACCAATGATCTTAATAAAGAACTCAGTTCCAATGAA
TACTTCCTAAATCGCCACCTCTTACAGGAATTTTATATTTATTTAATTCC
CCCGTTTATTCACCACATTTTCTTTCCCACTTTTCTTCACCACTTTTATT
CACCCACATTTTCGTTTTCTTATTTATTTATTTTTTTTCGCCCCTCAATA
TATTTGCTCTCCCCTTTTTATCTCACCAAAAACCCACTTACCCCATATAT
TTTTCCCTACTTATCTCTTTCTTCTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_f14.g1 MSMg01no186_f14.g1 CHROMAT_FILE:
MSMg01no186_f14.g1 PHD_FILE: MSMg01no186_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:19 2005
         (235 letters)



>mm_chr2_98389929_98390563
          Length = 635

 Score =  393 bits (203), Expect = e-114
 Identities = 224/231 (96%), Gaps = 2/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaaaagatatgtatattctaataaaaatatgtaatcatggtataaaatgatttctttt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaaaatatatgtatattctaataaaaatatgtaatcatggtataaaatgatttctttt 260

                                                                       
Query: 61  taattatgtaatatacatcttaggcaacttgcaaacatctaataaatttatgccttctga 120
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 261 taattatgtaatatacatcttaagcaacttgcaaacatctaatacatttatgccttctga 320

                                                                       
Query: 121 gtgggcatgaaagagtatattattaatcatttgaaagtaacctgattattaaattataca 180
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gtgggcatgaaagagtatatgattaatcatttgaaagtaacctaattattaaattataca 380

                                                              
Query: 181 ttacatttt-aaaatatatttttattaggtattttcctcatttacatttcc 230
           ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacatttttaaaa-atatttttattaggtattttcctcatttacatttcc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)