BAC Information

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BAC

Clone NameMSMg01-186J23
Chromosome2 (Build37)
Map Location 64,572,088 - 64,572,379
singlet/doubletsinglet
Overlap genenone
Upstream geneFign, LOC620544
Downstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186J23.T7 (MSMg01no186_j23.b1)MSMg01-186J23.TJ (MSMg01no186_j23.g1)
ACCAG378247AG378248
length856733
length of high quality
(start - end)
83 (45 - 127)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no186_j23.b1 PHD_FILE: MSMg01no186_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:40 2005CHROMAT_FILE: MSMg01no186_j23.g1 PHD_FILE: MSMg01no186_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGGCAGTTTTGATTTCTGAACGTGTGTGTGTGTGTGTGTGTGTA
TGAGTGTGTGCATGTGTGATTTAGAAATGTTTGTGATATACAAACACCCC
CCACACCCCCCCACCCCTGATATTTTCTCAATCAACCCCACCCCCCCAAT
CTAACATAACATTCACCACTTTACCCCCCCCCTCATCGCAAGTAACCCCC
TCTCCCCTCCCCCCCCCCTCACCCCTCTTTATCCCACACCCCCACTTACT
TCACACACCAACCACCCCACCCCCTTTTTTTTCTTATACCCACCCCCCCC
CCAAATAAAAAAAATTTTTTATGATTCCCCNANACCAAGACCCCCTGATT
ATAATTATTTAATTATAAAAATAATTTTCCCCCCCCCCCAAAAAAAAAAA
AAAATATGTTTGGCCGGGCGCCTCTTTCCCCCCCTTTTTCCTTTCTTCAT
CTCCTCCCCCTCCCCTCACATCCCTTCCCTTCCCCCCCATCTCTCTCTCC
AACTCTCCACCTACACCTCCCCCCCCTCTAATACCATCCTCTTCTACTCC
CTCTCCCTCCCTCTCCCCCCCCTCTTCCTTCACCTTACTCCTACCCTTAC
CCCTCTTCTCTCCCAACATTCCCACATATCTTCCCACCCCCCCATTCCCC
CTCTCCNCATCCCCCCCCCTCCTCTCCCTTTCCTCTCTGTCTCTCCCTAC
CCTTCCCCACCCTATACCCAATCCCCATTCTCCCTCCCCCCGCATCCTTT
TCTCACTCTCCCCTCTCTATCTCACTCCTTACCTCCCATTTACCTCCTCA
CCCCCT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAAGTGTGTAGTCCATTAATATTGC
TTGGAATTGGGGCATGAGTTCTGTTCGTTATTCTGCACATGTGAAATGTA
AACTGGCCAAAAGGGTGAAGGTAAACAAGGAGACAGTTTGAGCCATAAAT
CTACTGTTTTATGAATCTTTGAAAAAGTGTCTCTGTAACATATAACTCTT
TCCTGGGACAGAAAGAGCTAAGGAAATGGGACTAAAGAAAACAGAGTAAC
TATAATGGATAATGGATGAACAGATGGACCGAGAGCAATCAGGCCCATGG
ACCTTGCACACCAAATGCTAGGCTGGCAGCACGTTGGCCATTGGGACAGG
GAAGTGACCAATGTATGATCCTACATCATTGCCAACAACCACAAATAAAC
CAGGAACCACAGTGAAGTGAATGCAGTTGTTAGAAACCCAGAGCATGCCA
CAGGCACCCTAAGAAAATGCTGGGTTCCCTCTTGNAAAACTTCAGTATTT
ACCTGGCTTTTAGATAAAAGTGAGAGGAATATCACAGTAAGATAAAAATC
ATTTGTAATTTTATTGACCTCAGTCATAAGGTAGAAAAATATGTAAAATA
AAAATATATATGGCAAAGGTGTGGAAATCACAAAATTACTTAAAAACATT
TTTAAAACCTTGCCTTATTCTCCATCACGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_j23.g1 MSMg01no186_j23.g1 CHROMAT_FILE:
MSMg01no186_j23.g1 PHD_FILE: MSMg01no186_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:40 2005
         (292 letters)



>mm_chr2_64571888_64572579
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagtgtgtagtccattaatattgcttggaattggggcatgagttctgttcgttattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccaagtgtgtagtccattaatattgcttggaattggggcatgagttctgttcgttattct 433

                                                                       
Query: 61  gcacatgtgaaatgtaaactggccaaaagggtgaaggtaaacaaggagacagtttgagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcacatgtgaaatgtaaactggccaaaagggtgaaggtaaacaaggagacagtttgagcc 373

                                                                       
Query: 121 ataaatctactgttttatgaatctttgaaaaagtgtctctgtaacatataactctttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ataaatctactgttttatgaatctttgaaaaagtgtctctgtaacatataactctttcct 313

                                                                       
Query: 181 gggacagaaagagctaaggaaatgggactaaagaaaacagagtaactataatggataatg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 312 gggacagaaagagctaaggaaatgggactgaagaaaacagagtaactataatggataatg 253

                                                               
Query: 241 gatgaacagatggaccgagagcaatcaggcccatggaccttgcacaccaaat 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gatgaacagatggaccgagagcaatcaggcccatggaccttgcacaccaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)