TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCCCTATGACAACCTCGAAGTTTCTTCAAGGTAATCTACTGGTG
CTAGCCTGCATCGAGTGGAGATAATTTATTTACTTTTACTTTTTAAATTT
ATGAGAAGGCTTCTCTCTTACACTAAAATAATCATAAATTCCTAGCTACT
GTCAGGTTAATATCAAAAGCAGAAATGTGTGATACCCCACAGCCTCAGCA
CTATTTAAAGATCAGAAGGTAGTATAGTGTCTCCCTGTTGTCCCCTACAG
CCCCACAGGAGGAGGTTTTTTTTTTTTATTCTCAGGCAAAGCCGAAAAAA
NAAAATTTAAGGTGAAATCCCCANAACAAAACCCCGATATTTTTATTTGT
TAAGTGTATTGTTGGCCCCCCCCCGTTCAAAAAAAAAAAAAAAAAATTTG
GGCGGGGGGGGGGTGCGATTATTTCCTCTCTTACATGTTTAAAATTCAAA
TCTCCGTCTTCTATTCTAATAACTCCAATTTTATTCCTTCCTCCTACGCA
CCATTATTTTTTATACATTCCTTTTTATTTTTTCCTCTCCTTTACCCCCC
ACAATTTGCCTCCCCCGTTTACCGCCTTTTCCTACCACATTTTCCTCCTT
TCTTCCCTTTTATTATGATTTCGTTACTTTTATTTCTCACAATCATTTTT
TTTTCCTTACCTCTATTCACACACCCACTCTTATTTATTTGCCCCCTCTT
TATTCCCTTTCTCCTATTCCCTTCCTCTTTTGTATGTAACACATGTATAT
CTCTCTCTTCTTN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCCTTATGAGATAGGAAAAA
CATTTAGAAACATGTAGAATAGACTACAAAGAATATATTTCTAATCAGTT
CAAACCTAATCAGTTCTAATAACCTCATTAGTCTTGTCTCCTCTTTTTCT
TTCTCCAGAGAAAGTGGTGATATAAAAGCTACCATTGATGTGTAAGGCGG
GTGTTCATGAAGGATGCACAACATCCTACCAAGCTGAAGCTTTTACTAAG
GGTCCTTTCACACTTAGTGTCTTCCAATATGCTTTAAATGCATCTATGTC
GACAATGATTTTTTCTTTCCCCCCCCGCCCCCAGCATCTCACTGTATGAA
TGAACAGACATTCCCCCCTTCACATAAAAATATGAATATATAGTTTGCCG
CTGTAGATTATTATACTTGTCATGGACAAACTTCATCCTTGGTATCTCTT
CTCTCATTTCCTTCCCTACCTTTTCTTTCCGTCTTACCCCTTCCATCCCA
GTTTTATCCAACCTTTACCGCGTGTATTTCGCATAGCTCTTTTTTTCCAC
TGTTCCGTGTTTATCCTCATTATGTTATAATTCTTTTTTTCTCCTTTTTA
CCCCACTTTAACCTTCCCTTTTTCCTTTTTTTATCCGCCCCATTTTCTTC
CCCCCCTTTTTCTCCACTCATCTCCTTTCAACTTTTTCTACATTTTCTTT
CTTCCCCCC

Query= MSMg01no186_n16.b1 MSMg01no186_n16.b1 CHROMAT_FILE:
MSMg01no186_n16.b1 PHD_FILE: MSMg01no186_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:58 2005
         (254 letters)



>mm_chr2_106489477_106490130
          Length = 654

 Score =  422 bits (218), Expect = e-122
 Identities = 242/250 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgccctatgacaacctcgaagtttcttcaaggtaatctactggtgctagcctgc 64
           |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 454 gaattccgccctatgacaatctcgaagtttcttcaaggtaatctactggtgttagcctgc 395

                                                                       
Query: 65  atcgagtggagataatttatttacttttactttttaaatttatgagaaggcttctctctt 124
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 394 atcgagtggggataatttatttacttttactttttaaatttatgagaaggtttctctctt 335

                                                                       
Query: 125 acactaaaataatcataaattcctagctactgtcaggttaatatcaaaagcagaaatgtg 184
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acactaagataatcatgaattcctagctactgtcaggttaatatcaaaagcagaaatgtg 275

                                                                       
Query: 185 tgataccccacagcctcagcactatttaaagatcagaaggtagtatagtgtctccctgtt 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 tgataccccacagcctcagcactatttaaaaatcagaaggtagtatagtgtctccctgtt 215

                     
Query: 245 gtcccctaca 254
           ||||||||||
Sbjct: 214 gtcccctaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no186_n16.g1 MSMg01no186_n16.g1 CHROMAT_FILE:
MSMg01no186_n16.g1 PHD_FILE: MSMg01no186_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:58 2005
         (282 letters)



>mm_chr2_106390916_106391596
          Length = 681

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%), Gaps = 1/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatccttatgagataggaaaaacatttagaaacatgtagaatagactacaaagaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatccttatgagataggaaaaacatttagaaacatgtagaatagactacaaagaatat 260

                                                                       
Query: 61  atttctaatcagttcaaacctaatcagttctaataacctcattagtcttgtctcctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttctaatcagttcaaacctaatcagttctaataacctcattagtcttgtctcctcttt 320

                                                                       
Query: 121 ttctttctccagagaaagtggtgatataaaagctaccattgatgtgtaaggcgggtgttc 180
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttctttctccagagaaagtggtggtataaaagctaccattgatctgtaaggcgggtgttc 380

                                                                       
Query: 181 atgaaggatgcacaacatcctaccaagctgaagcttttactaagggtcctttcacactta 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 381 atgaaggatgcacaacatcctaccaagttgaagcttttactaagggtcctt-cacactta 439

                                                     
Query: 241 gtgtcttccaatatgctttaaatgcatctatgtcgacaatga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgtcttccaatatgctttaaatgcatctatgtcgacaatga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space:   183456
Effective search space used:   183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)