BAC Information

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BAC

Clone NameMSMg01-186O15
Chromosome2 (Build37)
Map Location 98,361,216 - 98,361,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc4c, LOC621146, LOC664974
Downstream geneLOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186O15.T7 (MSMg01no186_o15.b1)MSMg01-186O15.TJ (MSMg01no186_o15.g1)
ACCAG378445AG378446
length807739
length of high quality
(start - end)		169 (46 - 214)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no186_o15.b1 PHD_FILE: MSMg01no186_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:03 2005CHROMAT_FILE: MSMg01no186_o15.g1 PHD_FILE: MSMg01no186_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTATGTAGTAACAGGTTTATAAATTAGAGACTGGGTGTTTTAC
ACACATTGTTTATTCTAAAGTTAAATTACCATGAAACTAATATCATTAAT
ACTTTTACTAATTCATTACTGACGTTTTGATTTTTTGGTTTGCTTTTTTT
GTTTGTTGTGAGTTGAGAATAGAACATGAGACATGATGTTCCACGATACA
CGCCAAACTGATTGAATAGAAGCTGACTTATACCTTAATTCTCTTTCACC
TCTTAATGATGCCCCAAAAAAAAAAANGGTTCTTGAAACCTTCANANNTN
CTCCCNTGTTTTTTTTTCTTTCTNTNTCTTNNCTTATTTTTCCCCTTTTT
TTTTNTTTTCATTTCTTTTTTTTTTCTTTTTTTCCCCCCCTTTTTCTCCC
TCTCCTTNCTTTNCTTTTCTNCTCCCTTCNCNCNNNNNNNTCCNNCCCTN
NNNNNNCNNNNNCTTCCNTTTCCTTTTTTCATTCTTCTCTTTCTACATCT
TTCATGTGGGTGTTTGNNGGGAGAGTGGGGGGTNTTTTNTNNTTTTTTTT
TTTTCTTCNTCTCTCCTTTTTATATTCAATCCTATGGAGAGAGACCCTTT
CCCCCNTTTCATTATTATCTATCCCTTTTTTTTTTTTTATATATTCATCT
ACTGAAAGGCCCTGTTTTNTTCCCTCTCTNTCATCTCCTAGATCGGGAAA
GCATAATTTTNTCNNNNTTNTTTTTTTATTTCCATTTATATAGCGCGGGC
GGGGATG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCTGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCATTTTTGTTCACCCACCCCCAAGATGCCCCAACTCGTAA
GAAGGACACATGCTCCACCACGTTCATAGAAAACTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGCGGTACCTCTACACAATGGAGTACTACTCTGCTATTAAAAAGAAAAA
TTCACGAAATTCCTAATCTCATGGATGGATCTGGAGGGCCTCATCCTGAT
TGAGGTATCCTCTTCTTCAATTACTCTCTAAACAAGTAATCTCTGCAAAA
GGTTTTTCATTTTTAAACTTATTATTCTCTGATTTTTAGTACAATTTTTC
TTATCCCCTCATCTTTTTTATAAAGCAACTCACTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_o15.b1 MSMg01no186_o15.b1 CHROMAT_FILE:
MSMg01no186_o15.b1 PHD_FILE: MSMg01no186_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:03 2005
         (169 letters)



>mm_chr2_98361012_98361580
          Length = 569

 Score =  311 bits (161), Expect = 1e-89
 Identities = 164/165 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtatgtagtaacaggtttataaattagagactgggtgttttacacacattgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 369 gaattcatgtatgtagtaacaggtttataaattagagactgggtgttttacacacattgc 310

                                                                       
Query: 65  ttattctaaagttaaattaccatgaaactaatatcattaatacttttactaattcattac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttattctaaagttaaattaccatgaaactaatatcattaatacttttactaattcattac 250

                                                        
Query: 125 tgacgttttgattttttggtttgctttttttgtttgttgtgagtt 169
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgacgttttgattttttggtttgctttttttgtttgttgtgagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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