BAC Information

Click to search

BAC

Clone NameMSMg01-187A02
Chromosome2 (Build37)
Map Location 155,631,388 - 155,707,724
singlet/doubletdoublet
Overlap geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneRaly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187A02.T7 (MSMg01no187_a02.b1)MSMg01-187A02.TJ (MSMg01no187_a02.g1)
ACCAG378510AG378511
length731715
length of high quality
(start - end)		647 (45 - 691)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no187_a02.b1 PHD_FILE: MSMg01no187_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:10 2005CHROMAT_FILE: MSMg01no187_a02.g1 PHD_FILE: MSMg01no187_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,707,255 - 155,707,724)(155,631,388 - 155,632,012)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAGGGTCAGGACTGCATGTATCACTCTTTGTAGTCTCCAGAGTG
CTTATAATTTACCTGTTGGCTGAATAGTGACTCTCTGAAGAATGAAAGAA
CACAATTCTAGAGGCCTGGGATAGGTATTAGGGAAATGGGGCAGGAGATA
CCGTTTTATTCTGAGGATATTTATCTGTGTTGGTTTTAAATATTGGGAGA
AAGACTGATTTTTTTTTCTAGTGACAATTTTTAAGTTACATTTATTTGCA
TGAGTGCCTGTACTTGTGTGTACAGGTGTGCACGTGCTAGGTATGTGTGT
GGAGGTCAGATAATAGCTTCCACGGACTCAGCTCTCTGCTTCTACCGTGC
AGGTGCTAGGGAACTGACCCAGGCCCAGGCTTGGCAGCAGGCTCACACTG
CTGAGCCATCCTACCAAGTCCCCTGCCTTCATTTTTTATGTTTCTATTTT
CTGTGCTTTTTAATTTCCTACTGAAATTGATTGTTTTGTTTTGTTTTTTT
AAACCTGAGCTTACAATAGGGTATTTTACGTTTCAAAAATGGGATTAACA
AAGGCTTTAGATTTTCTAAAACTCTCCTTCCAATCTTCCAAGTTTCAAAT
AACCCCTTCCCCATGTTCTTCCTCCCCAGAAAGATTTCCAAAGAGGGCTA
GGGATCTAACTCGGGATAGAATGCCTACCTA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTTTCCTCAAAACTTTACTC
AGAAACGCCAGGTAATTCCCACCCTCGTCTGACTCTCCAGAGGCCTTAAT
TAAGCAGGGCAACTCTGCCAGGGATACCAGGGCAGAGTAGGCAAGAATGT
TCCCAACTCCTGTTGGACTTTGAGATGAAAGGGACTGAGGCGTGTGTAAG
AGTGGGAGATAAGAGAAAGGTCCCAAGGGGTGAACAAATGCCAGAGATAG
AGCAGGAGGGGCCAGAACCGTGGCTACAGTGTTCTGCCCAACTCCTTGGC
CGTATTCTTTCCCAACTATGGTTACTTAATGCCTACCGATTCAGGCCTTG
CCCTACCCGAGCCTTAAAGGAGAAAGTGATGGCAGCTAGTTTTAAGAGAC
TCTGGTTGCTGGAACCCTGCCGGCCGACCTTGTTGGTTGACAGGCTTGTT
CTGATCTAGCTCATGTCTTTTGTGCCTATAGCAGCAGAAGAACCATTCCC
AGCTATGCTGTGCATCTCACACCTGTTGGGTTTGCAGTCCTCGCTTAATC
AATGAGGCAGGTCCAGCTATTCCTTTCTACAAATGAGCATATTGGGGTTC
AGGTCTTAGCTTGAGTGCATAAAGCCTGAAGGTGTGGCCCTGGAATGATG
GCGNGGCTGTCCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_a02.b1 MSMg01no187_a02.b1 CHROMAT_FILE:
MSMg01no187_a02.b1 PHD_FILE: MSMg01no187_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:10 2005
         (647 letters)



>mm_chr2_155707255_155708301
          Length = 1047

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%), Gaps = 1/471 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaagggtcaggactgcatgtatcactctttgtagtctccagagtgcttataat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattcctaagggtcaggactgcatgtatcactctttgtagtctccagagtgcttataat 411

                                                                       
Query: 65  ttacctgttggctgaatagtgactctctgaagaatgaaagaacacaattctagaggcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttacctgttggctgaatagtgactctctgaagaatgaaagaacacaattctagaggcctg 351

                                                                       
Query: 125 ggataggtattagggaaatggggcaggagataccgttttattctgaggatatttatctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggataggtattagggaaatggggcaggagataccgttttattctgaggatatttatctgt 291

                                                                       
Query: 185 gttggttttaaatattgggagaaagactgatttttttttctagtgacaatttttaagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gttggttttaaatattgggagaaagactgatttttttttctagtgacaatttttaagtta 231

                                                                       
Query: 245 catttatttgcatgagtgcctgtacttgtgtgtacaggtgtgcacgtgctaggtatgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 catttatttgcatgagtgcctgtacttgtgtgtacaggtgtgcacgtgctaggtatgtgt 171

                                                                       
Query: 305 gtggaggtcagataatagcttccacggactcagctctctgcttctaccgtgcaggtgcta 364
           |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 170 gtggaggtcagagaacagcttcca-ggactcagctctctgcttctaccgtgcaggtgcta 112

                                                                       
Query: 365 gggaactgacccaggcccaggcttggcagcaggctcacactgctgagccatcctaccaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gggaactgacccaggcccaggcttggcagcaggctcacactgctgagccatcctaccaag 52

                                                              
Query: 425 tcccctgccttcattttttatgtttctattttctgtgctttttaatttcct 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  tcccctgccttcattttttatgtttctattttctgtgctttttaatttcct 1



 Score =  134 bits (69), Expect = 3e-35
 Identities = 81/85 (95%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                       
Query: 550 attaacaaaggctttagattttct-aaaactctccttccaatcttccaagtttcaaataa 608
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| 
Sbjct: 952 attaacaaaggctttagattttctgaaaa-tctccttccaatcttccaagtttcaaatag 894

                                    
Query: 609 ccccttccccatgttcttcctcccc 633
           ||||| |||||||||||||||||||
Sbjct: 893 cccct-ccccatgttcttcctcccc 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no187_a02.g1 MSMg01no187_a02.g1 CHROMAT_FILE:
MSMg01no187_a02.g1 PHD_FILE: MSMg01no187_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:11 2005
         (625 letters)



>mm_chr2_155631188_155632212
          Length = 1025

 Score = 1201 bits (621), Expect = 0.0
 Identities = 624/625 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctttcctcaaaactttactcagaaacgccaggtaattcccaccctcgtctgactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctttcctcaaaactttactcagaaacgccaggtaattcccaccctcgtctgactct 260

                                                                       
Query: 61  ccagaggccttaattaagcagggcaactctgccagggataccagggcagagtaggcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaggccttaattaagcagggcaactctgccagggataccagggcagagtaggcaaga 320

                                                                       
Query: 121 atgttcccaactcctgttggactttgagatgaaagggactgaggcgtgtgtaagagtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttcccaactcctgttggactttgagatgaaagggactgaggcgtgtgtaagagtggg 380

                                                                       
Query: 181 agataagagaaaggtcccaaggggtgaacaaatgccagagatagagcaggaggggccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataagagaaaggtcccaaggggtgaacaaatgccagagatagagcaggaggggccaga 440

                                                                       
Query: 241 accgtggctacagtgttctgcccaactccttggccgtattctttcccaactatggttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgtggctacagtgttctgcccaactccttggccgtattctttcccaactatggttact 500

                                                                       
Query: 301 taatgcctaccgattcaggccttgccctacccgagccttaaaggagaaagtgatggcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatgcctaccgattcaggccttgccctacccgagccttaaaggagaaagtgatggcagc 560

                                                                       
Query: 361 tagttttaagagactctggttgctggaaccctgccggccgaccttgttggttgacaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagttttaagagactctggttgctggaaccctgccggccgaccttgttggttgacaggct 620

                                                                       
Query: 421 tgttctgatctagctcatgtcttttgtgcctatagcagcagaagaaccattcccagctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttctgatctagctcatgtcttttgtgcctatagcagcagaagaaccattcccagctat 680

                                                                       
Query: 481 gctgtgcatctcacacctgttgggtttgcagtcctcgcttaatcaatgaggcaggtccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgtgcatctcacacctgttgggtttgcagtcctcgcttaatcaatgaggcaggtccag 740

                                                                       
Query: 541 ctattcctttctacaaatgagcatattggggttcaggtcttagcttgagtgcataaagcc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 ctattcctttctacaaatgagcatattggggttcaggtcttagcttgagttcataaagcc 800

                                    
Query: 601 tgaaggtgtggccctggaatgatgg 625
           |||||||||||||||||||||||||
Sbjct: 801 tgaaggtgtggccctggaatgatgg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |