BAC Information

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BAC

Clone NameMSMg01-187F16
Chromosome2 (Build37)
Map Location 162,518,799 - 162,611,122
singlet/doubletdoublet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187F16.T7 (MSMg01no187_f16.b1)MSMg01-187F16.TJ (MSMg01no187_f16.g1)
ACCAG378732AG378733
length727763
length of high quality
(start - end)		275 (23 - 297)282 (93 - 374)
definitionCHROMAT_FILE: MSMg01no187_f16.b1 PHD_FILE: MSMg01no187_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:39 2005CHROMAT_FILE: MSMg01no187_f16.g1 PHD_FILE: MSMg01no187_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,610,851 - 162,611,122)(162,518,799 - 162,519,080)
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCCTCTTGCCCAGC
CTTCTTAATGTAGGGATCCAGGTGTGCACCTCCACAGCTGGCTCAACACT
TTGCTTGTTTTTGTGGCAAGTGGTGGCATGCTAAGTTTTACTTCTTGCTT
GCTGGGGACTGAACTGTGTGAGCCTCACAGATGCTAATGCACTAACTGTT
TTCGTGTGCATCTTCTGAGATATTTGTGTGCCTTCAGTCATACTACCAGA
CACCAACAACCAGCTTCTGGTGATGTGGTCTAACTGTTCTAGAACTGTTA
GCCAGAGGATTCATCCTAGTCCAGTTGTGGCAACCTTGTTTCTTGCCCCC
CCTCCCCCTTCTCTCTCCTTGGCCTCAGTTTCTCTACCTTCCCCCCCCCA
AAGACAGAATTATAAAATCTCTAAAGTTCCTTTGCTCCCATCTAAAGGAA
AGTCTGTATTTTAGACATTCTATGATATCCTCATAAGCTATGTCCCCTCT
CACACGCGTGTTTGTTGATAGCTACCACGATAGCCGATATTTCATATCTA
TTTACTTGCTTCCCCTAATGTTCCAAATTCGCTTATTCGTTATTCAACCC
CCTTTTTTTCTTCTTATTTCCCCCCTCCTTTTTTCTACCCCTTTTTTCCC
CTTTTATTTCCCCCTATTCCCCCCCTTTCCTTCACCTCCTTTTTATTCTT
TTAACGCCTCTTGCCATATCCTCCCTA

NCGCCTTCCNNNCCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGCTC
TCAGGCATGAGCCACATCCAGCAGGAAGGCCACTCTCTTACCATTTCTGC
CTGGGTTCCTGAGATTTCAGGAATCACTGGGAGGCAAGTTGAGAACCCAG
AGGTCAGGAGGGAAATCCCCTTGACTAGTCTTCCTCTACTGTACACTCTC
CAAAGCAGGAAGACTGCATGTTACATACCTGTCACCAGCATGAAGAACCC
AGGAGGAAGAGCTGACACTACAAAAATACAGTCATAAATACTGTTTGCTG
AGCACTTACCATATGCCGTGCCCGATGTTAAGCCCCATCTCAGCTGGGAT
TCTACAAACCAGATCTTGGAACAAAGTTGCCACCGCAGAGAGTTTGTGTG
TGATGTGATCCTAGGATGTACACTGCGAGATGAGACCGGAGAGGAAAGAA
AGCACCAACAAAGGGGCCAGTAGTCATCCCAGTGGAAAACTGGCGACCCT
TTGAAGCTCTATGTTCACGCTGAGAATTATCTCGTATATTGTGGCTCAGC
AGTCTCTTTCTTATTTCTACTACCAACCATTTTTTTTCCGACTCCCCCCC
TACTTCATCGCCTCCCCTATTCTTCTCTCTTCTCTTTTTCTCCCTTCCCT
CTCTCGCTCTATATTCTCCTACCTCACCCTCCTTATACCCTAATCCCCCC
TTTACCGATCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_f16.b1 MSMg01no187_f16.b1 CHROMAT_FILE:
MSMg01no187_f16.b1 PHD_FILE: MSMg01no187_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:39 2005
         (275 letters)



>mm_chr2_162610580_162611254
          Length = 675

 Score =  503 bits (260), Expect = e-147
 Identities = 269/272 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgatcctcttgcccagccttcttaatgtagggatccaggtgtgcacctccac 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggaattcctgatcctcttgcctagccttcttaatgtagggatccaggtgtgcacctccac 484

                                                                       
Query: 64  agctggctcaacactttgcttgtttttgtggcaagtggtggcatgctaagttttacttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 483 agctggctcaacactttgcttgtttttgtggcaagtggtggcatgctaagttttagttct 424

                                                                       
Query: 124 tgcttgctggggactgaactgtgtgagcctcacagatgctaatgcactaactgttttcgt 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 423 tgcttgctggggactgaactgtgtgagcctcacagatgctaatacactaactgttttcgt 364

                                                                       
Query: 184 gtgcatcttctgagatatttgtgtgccttcagtcatactaccagacaccaacaaccagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgcatcttctgagatatttgtgtgccttcagtcatactaccagacaccaacaaccagct 304

                                           
Query: 244 tctggtgatgtggtctaactgttctagaactg 275
           ||||||||||||||||||||||||||||||||
Sbjct: 303 tctggtgatgtggtctaactgttctagaactg 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no187_f16.g1 MSMg01no187_f16.g1 CHROMAT_FILE:
MSMg01no187_f16.g1 PHD_FILE: MSMg01no187_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:39 2005
         (282 letters)



>mm_chr2_162518599_162519280
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgctctcaggcatgagccacatccagcaggaaggccactctcttaccatttctgcct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgctctcaggcattagccacatccagcaggaaggccactctcttaccatttctgcct 260

                                                                       
Query: 61  gggttcctgagatttcaggaatcactgggaggcaagttgagaacccagaggtcaggaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttcctgagatttcaggaatcactgggaggcaagttgagaacccagaggtcaggaggg 320

                                                                       
Query: 121 aaatccccttgactagtcttcctctactgtacactctccaaagcaggaagactgcatgtt 180
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaatccccttgactaggcttcctctaccgtacactctccaaagcaggaagactgcatgtt 380

                                                                       
Query: 181 acatacctgtcaccagcatgaagaacccaggaggaagagctgacactacaaaaatacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatacctgtcaccagcatgaagaacccaggaggaagagctgacactacaaaaatacagt 440

                                                     
Query: 241 cataaatactgtttgctgagcacttaccatatgccgtgcccg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaatactgtttgctgagcacttaccatatgccgtgcccg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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