BAC Information

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BAC

Clone NameMSMg01-188I08
Chromosome2 (Build37)
Map Location 145,716,494 - 145,716,780
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2
Downstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918, Gm114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188I08.T7 (MSMg01no188_i08.b1)MSMg01-188I08.TJ (MSMg01no188_i08.g1)
ACCAG379516AG379517
length1,032722
length of high quality
(start - end)
---287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no188_i08.b1 PHD_FILE: MSMg01no188_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:12 2005CHROMAT_FILE: MSMg01no188_i08.g1 PHD_FILE: MSMg01no188_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAAGATCTCTTTTTATTNCTTCCNCTNNTNCNTCTCTCTTTTTTTT
TCTATTTCTCCTCGTTATTTCTTGTCTTTTTTTTGCTTCTCTTCCTGGTT
TTGTTGTATTNNTTCTCTTGTTGCGTTCTACTTCTNNNTTCTTCCTTTTC
NTCCTCNNCAAATGGTTTAATGTTCTCTCCTGGTTTTGTCGTTCCTTTTT
CTTCTTNTTTNNTCTNNNTTNNNTTTTTTTCCTTTTTCCCTCTTTCTCTT
TTTCTCTTCTTCCTTGTTTTTTTTTTTTCTCCCCTTTTTTTTTTTTTCTT
TCTTTTTTTNTTTTTTTCCCCCCCTTTTTTTTCCCCCCTTTTTTTTTTNT
CTCCCCTTTCTCTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCCTCC
TCTTCTTCCCCCCCGACATCTNTTCCTCTCTCTTCTTTTTTTTTTCCCTC
TTCTCTCTACTGTTTTCCTTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTT
TTTTTCTCCCCCCCCCCCCCCCCCCCCCCNCNCTTTCCTAAAACCACTCC
CCTCCCGTCCTCCCCTCNCTTTTTTTTTATTTCCTTTTTTTCCCTCTTCT
TTCTTCTTTTCTTTTTTTCTTCTCTCTTTCCNCTCTTCTTTCTCCTCCCC
TCTTTTTTCTTTCCCTCCCCTCTTTCTTCTTTTTTTTTTCTTAATCATAC
AATACCTCCTCTCCTCCTCGTTTGGTCTCTTCCTTCCTTCTTTTTTTTCT
TTTCTTTTTCNTTTTTCTCTTCTCCCTCTCTTTCTTCCTCTCCCTCTTTA
TTTNATTTCTTCTTCTCCCTCCTCTTCTCTTTTCTCTNCACCTCACTATC
TTCTTTTCTTTCCCCTCCTTCCTCCCTTTTTCNCNCCTTCTTTTTTCATC
TCTTCNNCTTTTTCCTTTTTCTCTTCTTTCTCTTCTATAAAACGCGCTTG
CTATCTNCCCCTTCTTNTATCTTNCACCCCTTCTTCAGTTGTATCTNTAT
TTCTTCCACAGCTCTTTTCTAGCCCCCTCCTG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGTGAATGAACCATCAACCACCCAC
CCTGTCTGTCACAAAGACTCCGAGGCAACTGCTGCAGTTTTAAGTGTGTA
ATTTTAAGTAATTTTGATTTTGCTTCTCAGTGTTGGGATGGGATCCAGGT
CCTTGTGTTCTCTAGGCAAGCACTCTGCCTCTGAGTTGGGACACCCAGCC
CTAGGCTACATCTTGAAATCACCTGGGGCTGCCTAGACCATCAGTGGTCT
TCAAGTGGTACCCAAGTGTCCCGGTGATTAACACCTCAGGATGCTCCCAC
CAAGAGCTACCATTTTAATTCCCACCCCGACAGCACCGTGGGCATGTAGC
CTCTTGCTTGGCCACTACCGCCTGAATAGTGCACACTCCTTATTTCGCTC
AAGTACTTTGGGCCCCTTTATCCAACATAAACATAAAGCTGATTACAAAT
TTTCTAGAAGCCACATTTAAAAAAAGAAAAAATCCTTTAATCCCAGCACT
TGGGATGTAGAGGCAGGTACATTTCTGAGCTCAGTTCGAGGCCAGCCTGT
TCTACAAAGTGAGTTCCTGTACAGCCAAGGCTACACAAAGAAACCCTGTC
TCGAACATCCTTGAAATATTGACCGAGAGAGAGAGCGAGAGATTATAAAA
GACTAGCATTTCAAATCAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_i08.g1 MSMg01no188_i08.g1 CHROMAT_FILE:
MSMg01no188_i08.g1 PHD_FILE: MSMg01no188_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:12 2005
         (287 letters)



>mm_chr2_145716294_145716980
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtgaatgaaccatcaaccacccaccctgtctgtcacaaagactccgaggcaactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgaatgaaccatcaaccacccaccctgtctgtcacaaagactccgaggcaactgct 260

                                                                       
Query: 61  gcagttttaagtgtgtaattttaagtaattttgattttgcttctcagtgttgggatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagttttaagtgtgtaattttaagtaattttgattttgcttctcagtgttgggatggga 320

                                                                       
Query: 121 tccaggtccttgtgttctctaggcaagcactctgcctctgagttgggacacccagcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaggtccttgtgttctctaggcaagcactctgcctctgagttgggacacccagcccta 380

                                                                       
Query: 181 ggctacatcttgaaatcacctggggctgcctagaccatcagtggtcttcaagtggtaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctacatcttgaaatcacctggggctgcctagaccatcagtggtcttcaagtggtaccc 440

                                                          
Query: 241 aagtgtcccggtgattaacacctcaggatgctcccaccaagagctac 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgtcccggtgattaacacctcaggatgctcccaccaagagctac 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)