BAC Information

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BAC

Clone NameMSMg01-188L03
Chromosome2 (Build37)
Map Location 37,291,935 - 37,292,171
singlet/doubletsinglet
Overlap geneZbtb26
Upstream geneOlfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6
Downstream geneRabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188L03.T7 (MSMg01no188_l03.b1)MSMg01-188L03.TJ (MSMg01no188_l03.g1)
ACCAG379631AG379632
length740729
length of high quality
(start - end)
674 (62 - 735)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no188_l03.b1 PHD_FILE: MSMg01no188_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:26 2005CHROMAT_FILE: MSMg01no188_l03.g1 PHD_FILE: MSMg01no188_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCCNNNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCAACTGAGGAATTCCAAATGACTGAGAA
GCACCTAAAGTAATGTTCAAAATCAACAGGGAATGCCGGGTGGTGGTGGC
ACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCGGATTTCTGA
GTTCAAGGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCACGACTA
TACAGAAAAACACTGTCTCAAAAAAACAAAAACAAAATAATAATAATAAT
TAATAATAATAATAATAATAATAATAATAATAAACAGGGAAATACAAATC
AAAACAAGCCTGAGATTCCACCTCATATCAGTCATAATGGCTAACATGAA
AAACTCAGGTGACAGCAGGTTCTGGCAAGGTTGTGGAAAAAGAGGAACAC
TCCTCAGTTGCTGATAGGATTGCAAGCTGGTACAACCACTCTGGAAATCA
GTTTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCTCAGGATCCAAC
AATACCACTCCTGGGCATATACCCAGAAGATGCTCCATCATGTAATAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGTACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTGCATTTACACAATGGAGTATTACCCAGCTATTAAAAAG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAGATGGAACTGGTAAATTAC
TTGACTGCTGCGAGTTTTCTTCATACGCCCCACATTGTAGAACGGTGCAC
ACAGGCGCTGTGGAAGTTTATAAAGCCAAAACAACCAATGGATAGTAAAG
AGGGATCTGAACCACAGAGCGCTTCTCCCCAGTCGAAAGAACAGCAGGGA
GATGCCAGAGGCTCTCCAAAGCAGGACTTACCTTGTATTCATCCATCTGA
AGACAGTATGGATATGGAGGACAGTGATATTCAGATTGTTAAGGTAGAAT
CTATTGGGGATGTATCTTATGATAGAAGCCAAACAGATGAGAACCAGTAC
ATTTCTTCTGAACCCACTGCTTTGCACTCATCAGAGCCCCAGCACTCCCT
GATAAACTCAACTGTGGAAAACAGAGTTAATGAACTAGACCAGAGCCATC
TCCACAATTACGCCCTCTCTTACACAGGCAATGATGACATCATCATGACC
TCTAAAGATGTCTTTTGGGCCTAATATTCGAGGGGTAGACAAAGGTTTAT
AGTGTCATCACCAGTGCCCAAAGTGTACCAGGGTATTCCGTCACCTGAAG
AACTAGGCCCATCATTTAAAAATGCACAACATGTTTATGTGCCTACTCTG
CGGCAAATATTTTCCACCATAAAGTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_l03.g1 MSMg01no188_l03.g1 CHROMAT_FILE:
MSMg01no188_l03.g1 PHD_FILE: MSMg01no188_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:26 2005
         (239 letters)



>mm_chr2_37291735_37292373
          Length = 639

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacattgtagaacggtgcacacaggcgctgtggaagtttataaagccaaaacaaccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccacattgtagaacggtgcacacaggcgctgtggaagtttataaagccaaaacaaccaat 378

                                                                       
Query: 61  ggatagtaaagagggatctgaaccacagagcgcttctccccagtcgaaagaacagcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggatagtaaagagggatctgaaccacagagcgcttctccccagtcgaaagaacagcaggg 318

                                                                       
Query: 121 agatgccagaggctctccaaagcaggacttaccttgtattcatccatctgaagacagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agatgccagaggctctccaaagcaggacttaccttgtattcatccatctgaagacagtat 258

                                                                    
Query: 181 ggatatggaggacagtgatattcagattgttaaggtagaatctattggggatgtatc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggatatggaggacagtgatattcagattgttaaggtagaatctattggggatgtatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)