BAC Information

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BAC

Clone NameMSMg01-188L04
Chromosome2 (Build37)
Map Location 108,656,826 - 108,657,112
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003
Downstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf, LOC100043427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188L04.T7 (MSMg01no188_l04.b1)MSMg01-188L04.TJ (MSMg01no188_l04.g1)
ACCAG379633AG379634
length697727
length of high quality
(start - end)
324 (9 - 332)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no188_l04.b1 PHD_FILE: MSMg01no188_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:26 2005CHROMAT_FILE: MSMg01no188_l04.g1 PHD_FILE: MSMg01no188_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCAGTTTGCAAGTATTGTACTGATAATTTTTACAT
CTGTGTTCATGAAAGAAATTGGTCTATAATTTTCTATTTACGTTTGATTT
TTGTCTCATTTTGATATTAGGGTAATACTGGCAAAAATTTACCTTGTACA
AAATATGGCATCTTTTAATATATGGTGCTAGTTAAAGTGGTTAGCTACAT
GTGAAGAATACAACTAGATTCCTGTTTCTTATACTACACAAAGATCAACT
CCAATTGGATCAATGACCTCATTCATAAGGTCTGGTAATCTATATCTGAG
AAACGAGAAAGTAGGTCATACACTTTTTTTTTCTGTCCCTCCCCGCTCAC
CCCACAGGAAAGGACTTTTTGAACAGGACACCGACTGAGCAAGTATTAAT
ACCTTCATATTCGATATGAGACCTCATGAAATGAAAACATTTCTGTATAG
TAAAGAACAGCAGCATCCTGACGAGTTATAAAACTAAATCTTTATCAGCC
ATACGTCTGACTAAGAGTTGCAATTTAGAATATACTATACTCTACCCCAT
CCTATAGAAGAACCCCGCGCCTTTATTGAGTCCTTGTAATCTAACTGATT
ATTCGTAATAATATGAACAAGAAATGGTTGAAATAACTTATTCTTATTCC
TGGATAAGTGGTTATGTTTTAACTTGCCTGCCTTCTCTTCATTATAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCCTCAAACCCACAAATGCTGAC
TCCCAGCCCCAATTTAGTCTTCCTTCTCCCACACATAGAGAACACAGTTG
TGTCAGTTGTCATGAGTAATCAAAGCATGGCAGCCAATTTGAAAGCCATT
CTGATGAACACTGCAGATCATCAGTAAAGAATGTAACTATGCACTAGAGT
TGCTGCCCTGTGGTGGGAGAATATGAGGTTGGCCCAAGGGGATGCATATT
TTTAATACCTTTCCTGCATCTTCTAAACTAATGAAAGGAACTGGAATAAA
AACCACCCACTAAAAATATTGTCAATTAACACTGAAATCATCAAATATTA
AAATCTCCAGGCAGCTTTTCATCGTACTAAAATTAAAATTATGCAGAGAT
GCTGTCAAAGATGCAATGATGAGGTGACAAAACAAGAGAGAAGAGACCAT
TTGAGTCACCATAAAGGAGGTGGAGAGTTAAATAAATACATTCTCCTTTT
CTACCTACCCCTGCTCCAATAAATGTGTGTCTAATTTCTCATTTGTCTTT
CTTCTAGACCCTTCTGAATGCATTTATTCTTCCTTCATTTGTATTCTCCC
AACCTAGATCATTACTACTGCATAGTTAATATTCTACTTACATGTCACTC
CAGCTACTAAGCACTGATTCTTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_l04.g1 MSMg01no188_l04.g1 CHROMAT_FILE:
MSMg01no188_l04.g1 PHD_FILE: MSMg01no188_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:26 2005
         (287 letters)



>mm_chr2_108656626_108657312
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctcaaacccacaaatgctgactcccagccccaatttagtcttccttctcccacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcctcaaacccacaaatgctgactcccagccccaatttagtcttccttctcccacacat 260

                                                                       
Query: 61  agagaacacagttgtgtcagttgtcatgagtaatcaaagcatggcagccaatttgaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaacacagttgtgtcagttgtcatgagtaatcaaagcatggcagccaatttgaaagc 320

                                                                       
Query: 121 cattctgatgaacactgcagatcatcagtaaagaatgtaactatgcactagagttgctgc 180
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgctgaagaacactgcagatcatcagtaaagaatgtaactatgcactagagttgctgc 380

                                                                       
Query: 181 cctgtggtgggagaatatgaggttggcccaaggggatgcatatttttaatacctttcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtggtgggagaatatgaggttggcccaaggggatgcatatttttaatacctttcctg 440

                                                          
Query: 241 catcttctaaactaatgaaaggaactggaataaaaaccacccactaa 287
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcttctatactaatgaaaggaactggaataaaaaccacccactaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)