BAC Information

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BAC

Clone NameMSMg01-189A16
Chromosome2 (Build37)
Map Location 146,007,207 - 146,116,098
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189A16.T7 (MSMg01no189_a16.b1)MSMg01-189A16.TJ (MSMg01no189_a16.g1)
ACCAG379859AG379860
length721728
length of high quality
(start - end)
315 (46 - 360)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no189_a16.b1 PHD_FILE: MSMg01no189_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:54 2005CHROMAT_FILE: MSMg01no189_a16.g1 PHD_FILE: MSMg01no189_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,007,207 - 146,007,518)(146,115,822 - 146,116,098)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATATGCTTCTTCTTTTCCCTCAGACTTCAAAAGACCAAATGCAC
TCACTCATTTGAAAGAACTGAAAGCCTGAACTGAATGTAGCAGGCATGTT
TTAATAGAACATGCAACAGGACGAGCATGGTGAAGGGTGTTTAAATAAGG
TAAACACTATGGTTGGTCCAGCTGTTTGCTTCGTTGCACAGGCCACAGCA
AAAGTGGATGGAGTCCAGAAGATCCTGAGTGGAGGAAATGCCCCTGAGTG
TCTGGAGAACACAAGGCAGGTCAATTTCTCAGAACAGAGTATTGGGGGGG
GGGAATCACATAGANGTGGGTCCCGGAGCTGACCCCAGGAGNCCTCTCTA
GTGTTCAGCGAGGTCTTGAGCCAAACATAAAAATAAGACAACTCTCCAGA
GCCCTGGAAAAGATTAGAAGTCACAGTGTCTGCTCCACTCAGGGTGCAAG
TGTCTAGACTTGAGACCCTCAAGGTCAAAGGGTTGACAGACAATGAATGG
TTTTAGTCCCAGAGGAAACACCACTCTAGTCCTTTCTAACGCATCTCAAA
AGCCAATTTAAATGTGTCAAACCGTTTCCAAGGGAATTTACCTCCCTTTC
CCCAAACGCAAGAATGTTTATCCTTGTACTCGAAAATTATCACCCCCCAA
CAAAAGTCAGACTCCCTAGGT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTTTGGGGCCATTTATGCAAA
TGTATACATAAATTTAATATAAGGTTTTTGTGTACTAAAAAGAGATTATT
CACATTTATAGTTAGCCTTCCTTTTTAGTGATCAAAATATTGGCTGTTTT
TTATGTGATCCCTTATTGAACATTTTATTTAAGCATTTTAGAGATGAGAA
TCTCCAACACTGTTTCTGACTATGTGTTTCTTAGTCACAGTCTGGCACAG
GGGTCGTTTGATGTTTGAATCTGGCAAATGGACTGACTCCTTAAAGGAAC
TTTTGCCTAGTTCCCCTATCGACCCCTTAAAAAATATATAATTTACAAAT
TATTATGAAAAGTTTATCAAGAAAAAAAGAAAATAGAGACTGGTATTATC
AATAATTATATTTAATTTGTGTTCCATTTTTGAAAGTGGTTTTACTTTTA
TCTGTAGATCCAAGTTGAAAAGTGTGCTCAGCTTCATGGGAATTGTCATA
GGGTTTCAGAAAAATGAAACAAAAACACTGCTTGTTCCTGAGTGTGCCTC
CCATCTTATATCCTGGCACTTGTTTTCCTAAGGCATCCTAATATCCTTGC
CCTTTGTCATTGGAAATGAACTGGTGCATTTGATGATACAAAAATTTCCC
TAAGCACTTATGATCCCCATTTTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_a16.b1 MSMg01no189_a16.b1 CHROMAT_FILE:
MSMg01no189_a16.b1 PHD_FILE: MSMg01no189_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:54 2005
         (315 letters)



>mm_chr2_146007004_146007718
          Length = 715

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatatgcttcttcttttccctcagacttcaaaagaccaaatgcactcactcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatatgcttcttcttttccctcagacttcaaaagaccaaatgcactcactcat 263

                                                                       
Query: 64  ttgaaagaactgaaagcctgaactgaatgtagcaggcatgttttaatagaacatgcaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgaaagaactgaaagcctgaactgaatgtagcaggcatgttttaatagaacatgcaaca 323

                                                                       
Query: 124 ggacgagcatggtgaagggtgtttaaataaggtaaacactatggttggtccagctgtttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggacgagcatggtgaagggtgtttaaataaggtaaacactatggttggtccagctgtttg 383

                                                                       
Query: 184 cttcgttgcacaggccacagcaaaagtggatggagtccagaagatcctgagtggaggaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttcgttgcacaggccacagcaaaagtggatggagtccagaagatcctgagtggaggaaa 443

                                                                       
Query: 244 tgcccctgagtgtctggagaacacaaggcaggtcaatttctcagaacagagtattggggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcccctgagtgtctggagaacacaaggcaggtcaatttctcagaacagagtattggggg 503

                       
Query: 304 gggggaatcaca 315
           ||||||||||||
Sbjct: 504 gggggaatcaca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_a16.g1 MSMg01no189_a16.g1 CHROMAT_FILE:
MSMg01no189_a16.g1 PHD_FILE: MSMg01no189_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:54 2005
         (279 letters)



>mm_chr2_146115622_146116300
          Length = 679

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgttttggggccatttatgcaaatgtatacataaatttaatataaggtttttgtgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtgttttggggccatttatgcaaatgtatacataaatttaatataaggtttttgtgtac 418

                                                                       
Query: 61  taaaaagagattattcacatttatagttagccttcctttttagtgatcaaaatattggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taaaaagagattattcacatttatagttagccttcctttttagtgatcaaaatattggct 358

                                                                       
Query: 121 gttttttatgtgatcccttattgaacattttatttaagcattttagagatgagaatctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gttttttatgtgatcccttattgaacattttatttaagcattttagagatgagaatctcc 298

                                                                       
Query: 181 aacactgtttctgactatgtgtttcttagtcacagtctggcacaggggtcgtttgatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aacactgtttctgactatgtgtttcttagtcacagtctggcacaggggtcgtttgatgtt 238

                                                
Query: 241 tgaatctggcaaatggactgactccttaaaggaactt 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgaatctggcaaatggactgactccttaaaggaactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)