This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
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Search Result
BAC
Clone Name
MSMg01-189F16
Chromosome
2 (Build37)
Map Location
137,409,791 - 137,454,131
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Snap25
,
LOC668911
,
Mkks
,
2210009G21Rik
,
Jag1
Downstream gene
Btbd3
Link
Open Mouse BAC browser
Click to get alignment info.
name
Snap25
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20614
MGI:98331
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668911
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668911
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
Mkks
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:59030
MGI:1891836
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
2210009G21Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74243
MGI:1921493
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs
name
Jag1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16449
MGI:1095416
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Btbd3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:228662
MGI:2385155
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Snap25
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:134032017
GeneID:20614
MGI:98331
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: synaptosomal-associated protein 25
transcript_id
: NM_011428.3
name
Mkks
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:10946953
GeneID:59030
MGI:1891836
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: McKusick-Kaufman syndrome protein
transcript_id
: NM_021527.1
name
2210009G21Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142373987
GeneID:74243
MGI:1921493
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 2210009G21 gene
transcript_id
: NM_028201.2
name
2210009G21Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142379392
GeneID:74243
MGI:1921493
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 2210009G21 gene
transcript_id
: NM_028834.2
name
2210009G21Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:84579819
GeneID:74243
MGI:1921493
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 2210009G21 gene
transcript_id
: NM_001038641.1
name
Jag1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142344047
GeneID:16449
MGI:1095416
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: jagged 1
transcript_id
: NM_013822.3
name
Btbd3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:70906456
GeneID:228662
MGI:2385155
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: BTB (POZ) domain containing 3
transcript_id
: NM_001025431.1
name
Btbd3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:70906454
GeneID:228662
MGI:2385155
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: BTB (POZ) domain containing 3
transcript_id
: NM_145534.2
name
Snap25
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755588
CCDS:CCDS16793.1
GeneID:20614
MGI:98331
definition
GO_component
: GO:0005886 - plasma membrane [Evidence TAS]; GO:0045202 - synapse [Evidence IEA]; GO:0019717 - synaptosome [Evidence IEA]
GO_function
: GO:0000149 - SNARE binding [Evidence IDA]
GO_process
: GO:0007269 - neurotransmitter secretion [Evidence IMP]
codon_start
: 1
note
: synaptosomal-associated protein, 25 kDa; blind drunk; GENA 70
product
: synaptosomal-associated protein 25
protein_id
: NP_035558.1
name
Mkks
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:10946954
CCDS:CCDS16794.1
GeneID:59030
MGI:1891836
definition
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO_process
: GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0050910 - detection of mechanical stimulus during sensory perception of sound [Evidence IMP]; GO:0009296 - flagellum biogenesis [Evidence IMP]; GO:0045494 - photoreceptor maintenance [Evidence IMP]; GO:0006457 - protein folding [Evidence IEA]; GO:0035058 - sensory cilium biogenesis [Evidence IMP] [Evidence IGI]; GO:0007608 - sensory perception of smell [Evidence IMP]; GO:0035176 - social behavior [Evidence IMP]; GO:0007286 - spermatid development [Evidence IMP]
codon_start
: 1
exception
: mismatches in translation
product
: McKusick-Kaufman syndrome protein
protein_id
: NP_067502.1
name
2210009G21Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84579820
CCDS:CCDS16795.1
GeneID:74243
MGI:1921493
definition
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 2
product
: hypothetical protein LOC74243 isoform 1
protein_id
: NP_001033730.1
name
2210009G21Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21312668
CCDS:CCDS16795.1
GeneID:74243
MGI:1921493
definition
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: hypothetical protein LOC74243 isoform 1
protein_id
: NP_083110.1
name
2210009G21Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84579818
CCDS:CCDS16796.1
GeneID:74243
MGI:1921493
definition
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 3
product
: hypothetical protein LOC74243 isoform 2
protein_id
: NP_082477.1
name
Jag1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7305197
CCDS:CCDS16797.1
GeneID:16449
MGI:1095416
definition
GO_component
: GO:0005576 - extracellular region [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]
GO_function
: GO:0005509 - calcium ion binding [Evidence NAS] [Evidence IEA]; GO:0008083 - growth factor activity [Evidence ISS]; GO:0005112 - Notch binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence ISS]
GO_process
: GO:0001525 - angiogenesis [Evidence ISS]; GO:0042491 - auditory receptor cell differentiation [Evidence IMP]; GO:0007154 - cell communication [Evidence IEA]; GO:0001709 - cell fate determination [Evidence ISS]; GO:0007275 - development [Evidence IEA]; GO:0045446 - endothelial cell differentiation [Evidence ISS]; GO:0030097 - hemopoiesis [Evidence ISS]; GO:0048839 - inner ear development [Evidence IMP]; GO:0030216 - keratinocyte differentiation [Evidence ISS]; GO:0002011 - morphogenesis of an epithelial sheet [Evidence IMP]; GO:0045445 - myoblast differentiation [Evidence ISS]; GO:0045596 - negative regulation of cell differentiation [Evidence IMP]; GO:0007399 - nervous system development [Evidence ISS]; GO:0007219 - Notch signaling pathway [Evidence IEA] [Evidence ISS]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0045639 - positive regulation of myeloid cell differentiation [Evidence IDA]; GO:0045747 - positive regulation of Notch signaling pathway [Evidence IDA]; GO:0042127 - regulation of cell proliferation [Evidence ISS]
codon_start
: 1
product
: jagged 1
protein_id
: NP_038850.1
name
Btbd3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70906455
CCDS:CCDS16798.1
GeneID:228662
MGI:2385155
definition
GO_function
: GO:0005515 - protein binding [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: BTB/POZ domain containing protein 3 isoform 1
protein_id
: NP_663509.2
name
Btbd3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70906457
CCDS:CCDS16799.1
GeneID:228662
MGI:2385155
definition
GO_function
: GO:0005515 - protein binding [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: BTB/POZ domain containing protein 3 isoform 2
protein_id
: NP_001020602.1
name
LOC668911
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668911
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-180E04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-462E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-367P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505J02
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-527B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-382J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-212P18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-490C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-481G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-187A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-293D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-530H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-504K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-087G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-334P13
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-158G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529E17
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-534P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-207I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-299P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-504K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391H21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-127P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-427A16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-502F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-185N10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-350H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-463O22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-104O10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-125M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-185G18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-220M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-128N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-007C02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-132C21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-104P14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-006B12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-028J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-167N18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-028D13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030F19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120L04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-217L14
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