BAC Information

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BAC

Clone NameMSMg01-189L08
Chromosome2 (Build37)
Map Location 91,226,938 - 91,227,224
singlet/doubletsinglet
Overlap gene1110051M20Rik
Upstream geneGA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289
Downstream geneLrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189L08.T7 (MSMg01no189_l08.b1)MSMg01-189L08.TJ (MSMg01no189_l08.g1)
ACCAG380300AG380301
length777748
length of high quality
(start - end)
65 (6 - 70)287 (88 - 374)
definitionCHROMAT_FILE: MSMg01no189_l08.b1 PHD_FILE: MSMg01no189_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:45 2005CHROMAT_FILE: MSMg01no189_l08.g1 PHD_FILE: MSMg01no189_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATAGGGAGAGGATCCGCGGAATTCTGAGAGGTGGGGTGGATAGGATC
TATGTATATGTTATGGATTCGCCATACATCTTTCACCTTTGTCTCAAACG
CTAACCACCGGTATAATCCTTGCTTCCCCATTCGCTCGCATTTCTCTCAC
GATACGTCCTATTCCCTATGTCATCTACTTCTTTACAGCTAATCTCCTAT
TTACTAGACATAATCCTCATTTATCCCTCCTACGCTATCCACTCCGCATC
TTATATGCCCCACCAATGAACCGACCCAAAGTTTACTCGTTCTTACATAG
ATCTATATGCTCCCGCCCACAAAAGTACCATTTTTTTTCTCCCCCCCCCC
CCCCCACCTTAATACAGCGTTCCACTCCTTTACTTCGCCCTCATCCCTTT
CAATTAAAAATAATTAATTCGGTCGGTCGTCCGTGCTTACCATTATTTAC
CCATGGTGTTTGCCCTCCTTCCAATACTTCCTCATCTCGATTCCTTTGCT
TTAACTTTGTTGTGTCCTGACCTATTAATTTTCGAGCCACTTTATTATTT
TTACCGACATTGATGCTATTTTTACACCCCCTGTTTTCGTCGTAACCGAC
TTTTTCTTACGTGCATAACCATTATATTCTAGTGACTATACTAACACACC
ATAATAATAAATTCCTTATCACTTTTGTCCACAACATAATAACATTATTA
AACATTTGTAAACTATCCAAATTTTGTAAAAGTAATCTTCGTGTAAACAC
CTTGTTTTTATCTTTTTTATACAATAT
CCCCAAATACTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCATAGCATGA
ACCACTGGGTATTCAAATTTCACTATGAAAACTCATTCTTTCAGTTGTTG
GGGCTTTGCTGAAAGACTGGAGTTTTGTTCTTCAAAAAGTTGGCAAACCC
TAAAGATATGTTTCTCTGTACAAATTGGTCCCTGAAGTAACAATTCATGG
ATTTGTTCTTTCCTTCCTTGTGAAGCTCAGACAAGGCCTAAAGCTCTTAA
ATGTTTTCTTTGCACTGCCTATCTACTACAGAATTTGGCAACAGTAACTT
GATGAGAGATGTCGGTGGAGCGTGTTTTTTCCCCCCGCCCTGCAGAACCC
TGAAGCCATTTAGACAACACACTTGTGCACAAGCTGCCTCACCCCCTGCT
CCTTCTACTGAGCTCTAAAGCCCTTCCCAGACATGAATTCAGCCACAGTG
TTCCTAACTACTTCACTGTCCTGTGGCCATCTGCCATTCTGCCATTTGAA
CGTGCAGTATACCTACTGTGGGAGGAAGTGAGTGGGGATCCTGTGTACAA
GGATTTTGACAAAGGTGGTTTTAATATGTAGTGCACTTGGAATGAGCTTC
TGTACACAGATATGAATCAGGAAAGCTATTGGGTTCATTGACTGTGCATT
CTCTGAAGCAATAAAGAGGTGTAAGTGGACTAGAACGCAGAGACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_l08.g1 MSMg01no189_l08.g1 CHROMAT_FILE:
MSMg01no189_l08.g1 PHD_FILE: MSMg01no189_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:45 2005
         (287 letters)



>mm_chr2_91226738_91227424
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcatagcatgaaccactgggtattcaaatttcactatgaaaactcattctttcagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcatagcatgaaccactgggtattcaaatttcactatgaaaactcattctttcagttg 260

                                                                       
Query: 61  ttggggctttgctgaaagactggagttttgttcttcaaaaagttggcaaaccctaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggggctttgctgaaagactggagttttgttcttcaaaaagttggcaaaccctaaagat 320

                                                                       
Query: 121 atgtttctctgtacaaattggtccctgaagtaacaattcatggatttgttctttccttcc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttcctctgtacaaattggtccctgaagtaacaattcatggatttgttctttccttcc 380

                                                                       
Query: 181 ttgtgaagctcagacaaggcctaaagctcttaaatgttttctttgcactgcctatctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgaagctcagacaaggcctaaagctcttaaatgttttctttgcactgcctatctact 440

                                                          
Query: 241 acagaatttggcaacagtaacttgatgagagatgtcggtggagcgtg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaatttggcaacagtaacttgatgagagatgtcggtggagcgtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)