BAC Information

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BAC

Clone NameMSMg01-189L10
Chromosome2 (Build37)
Map Location 15,659,485 - 15,659,794
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189L10.T7 (MSMg01no189_l10.b1)MSMg01-189L10.TJ (MSMg01no189_l10.g1)
ACCAG380304AG380305
length735747
length of high quality
(start - end)
316 (37 - 352)274 (447 - 720)
definitionCHROMAT_FILE: MSMg01no189_l10.b1 PHD_FILE: MSMg01no189_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:45 2005CHROMAT_FILE: MSMg01no189_l10.g1 PHD_FILE: MSMg01no189_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAG
GACTTGGAGAAACTGAGTGTTATTTGTCTTCATTCAAATAATAGATGGGA
TGTGAGAGAGCTTGCACAAAAACAGTCTCCAGTGGAAGCTTTAAAATAGA
ATGCACATTTGCAGAGCACAGTCTCAAATAGCGAGTTAGCTTCAAATTGA
TCACCATTTATCCCTTTCAAATTCCACTTGGGAAGTTTCAGAAAGGCACT
GTAATATGAGGGAAATGGAAGAATAAAATGTAAACACGTCCATTTTTTTA
ACCTCTTTTTGTACATCTGAACTGAGAAAAGAAGCTGAAATAAACACTGG
TTTTTGGACCCCCCCCCCCCTGGCAAAAGCAAATGTGTTTCATATGACCC
ACACACTCAGAAACAAAATTGTGAGTCTGTGTATGCACATGTCATTTAAT
ATTTGAAATGCATTTTTCACATAAAGAGGTGTGTCTAAGTCTTACATGAC
CTTGTTCTTCAAGCAAGATCTTCAATCTGCTTTTCTCTCTGCCTCTAACA
CAGCAGAAACACGAATGGGAAGAGGCTTTGCGGGCTAAGAGAAGTCTTAA
CTCGAGCTGGGTAGCCACTGCAGCCCTACATAAGAGAATCCTTTGTTCCT
AAATAATACAGCATAGAGGGTATGGGAGGCTGCACTGACCTAAACATTTC
TCTTATAGATATAGTGAGAAAGTATTAAAGAAATA
ACCCACCCCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAT
ACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATC
AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAA
AATGTCTAAGATCAAAAATTCAGGTGACAGCACATGCTGGCGAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAA
CCACTCTGGAAATCCGTCTGGCGGTTGCTCATAAAATTGGACATAGTACT
ACAGGAGGATCCAGCAATATTTTACTTTGTCACCCCCCCCCCACGATGCC
CCAACTGGTAAGAAGGATACATGCTCCACTATGTTCAAAAAAAAATTATT
TATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAAT
GGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATT
AAAAAGAATGAATTTATGATATTCCTAGCCAAATGGATGGACATGGAGGG
CATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGT
ACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATA
AGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_l10.b1 MSMg01no189_l10.b1 CHROMAT_FILE:
MSMg01no189_l10.b1 PHD_FILE: MSMg01no189_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:45 2005
         (316 letters)



>mm_chr2_15659281_15659996
          Length = 716

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaggacttggagaaactgagtgttatttgtcttcattcaaataatagatggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaggacttggagaaactgagtgttatttgtcttcattcaaataatagatggga 264

                                                                       
Query: 65  tgtgagagagcttgcacaaaaacagtctccagtggaagctttaaaatagaatgcacattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgagagagcttgcacaaaaacagtctccagtggaagctttaaaatagaatgcacattt 324

                                                                       
Query: 125 gcagagcacagtctcaaatagcgagttagcttcaaattgatcaccatttatccctttcaa 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagagcacagtctcaagtagcgagttagcttcaaattgatcaccatttatccctttcaa 384

                                                                       
Query: 185 attccacttgggaagtttcagaaaggcactgtaatatgagggaaatggaagaataaaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 attccacttgggaagtttcagaaaggcactgtaatatgagggaaatgaaagaataaaatg 444

                                                                       
Query: 245 taaacacgtccatttttttaacctctttttgtacatctgaactgagaaaagaagctgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaacacgtccatttttttaacctctttttgtacatctgaactgagaaaagaagctgaaa 504

                     
Query: 305 taaacactgg 314
           ||||||||||
Sbjct: 505 taaacactgg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)