TTTTTTNCCTCATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCATGAGAGTATTGGGAACTAGAAAAGCCTTT
TACAACTCTGACAATTTGGAATAAGAGTTACATTTTCAAACTCCTACATC
AAACAGTATTTAGACATGTAATGTCCTTTAGAAATGGCCATGATTCTGGA
TTATTCAGCTTCCATTAGTCAAAAGCAAATACCAAAGAAGAATTCAGCCA
AGAGACCATCAACAGTTCTGCTAATTAGAATATTGGTTGCGTCTTCATGG
AGGGAGCTCTAAGAAGCACACTATGTCTGCTACTTCAATCAAACTACATG
TGCACATCTTCTTTGCGTATCAGTTCTGCTTACGAGCATCTATCATATGG
TAAGAGGGTGTATGTGCAACAGCTGTGTGCAAATGTAATTATATCAGCAT
AACAGAACTAAGACTATAATGAGAATTGTTTTATTATCATATAATGAAAA
CATAAATATAAAGTTTATATATAAAGAATTATGTGCAAACATATTTAAAT
CAATATATAAACAATGAAATTATTATATTTAATGGAAATTTTCTAAGGAA
AATTTAATATCTTCCATGAGTAAATTTTCAAGCTCATTGCAACACATTCA
TATTGTGAACAATTATAAAATCCTTGAAAATAAATGCTCCATTATGTGCC
ATTTCACAAGGATTTTTATGTCATTTATTGTATACACAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACTATTAGACTTATCCTTTAC
ATAAAAACACTTGACATCCATCCCGCAATTGAGTATTGCTAACGTCAGCA
CTGGTCTTCCCATCTCAACTCACAATCAAAGAATCTTGCACAGACATACC
AACAAGCCAACCTGAGCTAGACAATTCTGCAATTGAGACTCAATTTTCAA
GAGATTTTAAATTGTGGCAACTTGACATCTAAGAGTCCCTTCCTACATTT
GTCTTCTTGGTTTTGTTTTGTTTGTTTTGTCTTGTTTTGTTTTGTGTCTT
TGTCTCTTGCTCTTATGATCTCCCCCGACCTATCTTCCACTTGCCTTTAG
TGATAATATAGAGACAATTTTACCATCTATTTTTGGGATGTTATTTGTCT
AACAAATCCAGACATCCCTTGTCTGCTGGGAGCTCAACCAACTCAGATGC
TTCTCTTGAATTGCAAACCTATATTTTGTTTTGGATTTATCAACTACATG
TTGTTCATAAAATTATATTCTGAGTTTTAACATTTCACCTTGAATCTTTC
CTCTGGCTTTTTAAGTATATTCCTTATATATAATTTCCAAGCAATATAGA
ATATTTGGTCATCTGTTTTACTAGTAGCTATTGCATTTACCCAGCTAAGA
ATATCAGTA

Query= MSMg01no190_a03.b1 MSMg01no190_a03.b1 CHROMAT_FILE:
MSMg01no190_a03.b1 PHD_FILE: MSMg01no190_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:07 2005
         (680 letters)



>mm_chr2_54116187_54117266
          Length = 1080

 Score = 1251 bits (647), Expect = 0.0
 Identities = 668/675 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgagagtattgggaactagaaaagccttttacaactctgacaatttggaata 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatgccatgagagtattgggaactagaaaagccttttacaactctgacaatttggaata 622

                                                                       
Query: 65  agagttacattttcaaactcctacatcaaacagtatttagacatgtaatgtcctttagaa 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 agagttacattttcaaactcctacatcaatcagtatttagacatgtaatgtcctttagaa 562

                                                                       
Query: 125 atggccatgattctggattattcagcttccattagtcaaaagcaaataccaaagaagaat 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 atggccatgattctggattattcagcttccattagtcgaaagcaaataccaaagaagaat 502

                                                                       
Query: 185 tcagccaagagaccatcaacagttctgctaattagaatattggttgcgtcttcatggagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tcagccaagagaccatcaacagttctgctaattagaatattggttgcatcttcatggagg 442

                                                                       
Query: 245 gagctctaagaagcacactatgtctgctacttcaatcaaactacatgtgcacatcttctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctctaagaagcacactatgtctgctacttcaatcaaactacatgtgcacatcttctt 382

                                                                       
Query: 305 tgcgtatcagttctgcttacgagcatctatcatatggtaagagggtgtatgtgcaacagc 364
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatatcagttctgcttaggagcatctatcatatggtaagagggtgtatgtgcaacagc 322

                                                                       
Query: 365 tgtgtgcaaatgtaattatatcagcataacagaactaagactataatgagaattgtttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgcaaatgtaattatatcagcataacagaactaagactataatgagaattgtttta 262

                                                                       
Query: 425 ttatcatataatgaaaacataaatataaagtttatatataaagaattatgtgcaaacata 484
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcatataatgaaaacataaatataaagtttatatataaagaattatgtgcaaacata 202

                                                                       
Query: 485 tttaaatcaatatataaacaatgaaattattatatttaatggaaattttctaaggaaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaatcaatatataaacaatgaaattattatatttaatggaaattttctaaggaaaat 142

                                                                       
Query: 545 ttaatatcttccatgagtaaattttcaagctcattgcaacacattcatattgtgaacaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttaatatcttccatgagtaaattttcaagctcattgcaacacattcatattgtgaacaat 82

                                                                       
Query: 605 tataaaatccttgaaaataaatgctccattatgtgccatttcacaaggatttttatgtca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  tataaaatccttgaaaataaatgctccattatgtgccatttcacaaggatttttatgtca 22

                          
Query: 665 tttattgtatacaca 679
           |||||||||||||||
Sbjct: 21  tttattgtatacaca 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)