BAC Information

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BAC

Clone NameMSMg01-190C04
Chromosome2 (Build37)
Map Location 24,339,838 - 24,340,148
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8
Downstream geneLOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190C04.T7 (MSMg01no190_c04.b1)MSMg01-190C04.TJ (MSMg01no190_c04.g1)
ACCAG380581AG380582
length718716
length of high quality
(start - end)
315 (46 - 360)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no190_c04.b1 PHD_FILE: MSMg01no190_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005CHROMAT_FILE: MSMg01no190_c04.g1 PHD_FILE: MSMg01no190_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCTGCACATGGCTGGGGAAATACATCTTCCCATGATTCCTGGG
GGTAGGAGAGGACTCAGATGGAGGAAGTACTGATGGAGGTGGGGTGAGGA
AAACGTTTTCCAGTCAGATTTGGGTGTAGATGGCAATAGGCTGTAACCCT
CCAGTGACCAGGCAAGGGATTAGTGCTAGCCCTGTGTTGCTTTTCCAAGT
CTCCACCAGGATCAGAGCTTTGAGGAGCATTTTCCACCTCAAAATTTCCA
ATGGTCAGGGGATGCTTCTATATAAACACCATCAGATCTGAAAAGCCAGA
AGGAAGGTCATGTATTTTCTAATGCCCCCCCACATAGTGATAGGGTAGAA
AGGAGCCATAAGTTTGAAGCTTCTTAGAGATCTAGAGTTCAGGTTCCACC
CCAGTCCTGAGCAACAGAGAAAGCAGGGACAGGAAATTCATACACTGGGT
GTCTGATTTTGATGTGGGGTACTAGTTACTTTCAGTTACTTTTTGCTTTG
CTGGCACAGAATATCTGACCAAAGCCACGTATGGAGAAAGCCAGGGTTTT
TTGTCTCCCATTATTGTTCATGATCATATCTTGAATGAACTGGTCATATC
GTATTTTGTGTCGACAAGCACAGAGGTTGAATTGTCTGCTTGTTTTGCTC
AATTCTTTTGCTCTGTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTGATCCTCAGCTGTGAAGA
GCATCTGCAGCAGCTGCTGACAATCATCCCAAGTAGGCTGATGAGAGAAC
ATAAGGGACTCCACTAACCCTGTGAGGCATTGGGATCCTCTGAGAAAAGG
GGGGTGGTTAGTTTTCCAGTTATAAAGATCAGCAGAGGAAAATGGCCGGT
ACTGAAGGGATTGAAGGCTGGGCGGGTCCACCAGAGTCCATCCGGACTCT
GTGCTCTCCGGCTCCATGTACCCGCAGCGGGTCCGCCTCCTGCCACCCTG
AGGGGTTCAGGGTTCTCCAGCAGCGCCGGTTAAGCTGTGGATATGGGGGA
GGTAGTGGACTAGGCTACTCAGGAGGCTTCTGAATCTCAGAATAGATTTT
GGAGGAGCCGATGGGTTAGCTGGTGGCTCCAATTCGGGAGAAGCCTTCAC
TTTCAATTTCTGATTTCTCTTGTAACACCAGAGCACAACCACAATTTTGG
GAAGCAAAACTCAATTTTAACAGTGTAAACAATACATTCTCTTTCACCAA
ATTATCCCCAGATAGTCGGAGAGTACTGCTTTTCTCAAACCTGTTCTCTC
ATGTGGAAACTATCTCTAGTCAATGTTCATAGCACCTATGAGAATTACCT
TTGTTTCTCTAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_c04.b1 MSMg01no190_c04.b1 CHROMAT_FILE:
MSMg01no190_c04.b1 PHD_FILE: MSMg01no190_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:17 2005
         (315 letters)



>mm_chr2_24339634_24340348
          Length = 715

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%), Gaps = 2/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggctgcacatggctggggaaatacatc-ttcccatgattcctgggggtaggag 63
           ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct: 205 gaattcaggctgcacatgggtggggaaataca-cattcccatgattcctgggggtaggag 263

                                                                       
Query: 64  aggactcagatggaggaagtactgatggaggtggggtgaggaaaacgttttccagtcaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggactcagatggaggaagtactgatggaggtggggtgaggaaaacgttttccagtcaga 323

                                                                       
Query: 124 tttgggtgtagatggcaataggctgtaaccctccagtgaccaggcaagggattagtgcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgggtgtagatggcaataggctgtaaccctccagtgaccaggcaagggattagtgcta 383

                                                                       
Query: 184 gccctgtgttgcttttccaagtctccaccaggatcagagctttgaggagcattttccacc 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccctgtgttgcttttccaggtctccaccaggatcagagctttgaggagcattttccacc 443

                                                                       
Query: 244 tcaaaatttccaatggtcaggggatgcttctatataaacaccatcagatctgaaaagcca 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaaatttccaatggtcaggggacgcttctatataaacaccatcagatctgaaaagcca 503

                       
Query: 304 gaaggaaggtca 315
           ||||||||||||
Sbjct: 504 gaaggaaggtca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)