BAC Information

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BAC

Clone NameMSMg01-190G14
Chromosome2 (Build37)
Map Location 98,292,851 - 98,293,470
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc4c, LOC621146, LOC664974
Downstream geneLOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190G14.T7 (MSMg01no190_g14.b1)MSMg01-190G14.TJ (MSMg01no190_g14.g1)
ACCAG380766AG380767
length697695
length of high quality
(start - end)
313 (45 - 357)619 (77 - 695)
definitionCHROMAT_FILE: MSMg01no190_g14.b1 PHD_FILE: MSMg01no190_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:39 2005CHROMAT_FILE: MSMg01no190_g14.g1 PHD_FILE: MSMg01no190_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGACCCATACCTAAACATGATCAAAGTAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACTAGGCTGCCCATTTTCTCCCTACCTATTCAACATTTTA
CTTGAAGTCCTAGCCAGAACAATTCGACAACAAAAGGAGATTAAGGGGAC
ACATATTGGAAAGGAAGAAATCAAAATATCACGTTTTGGGGATGACATGA
TAGTATATATAAGTGACGCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAATCTGGTTCAGCGCACCGAGCTGGATATAAAATTAACTCAAACAAG
TCAATGGCATATCTCTACACAAAGCATAAACAGGCTGAGAGAGAAATGAG
AGAAACAACACCCTTCTCAATAGTCAAAAATAATATAAGATAACTTGGCA
TGACTCTAACTAAGGAAGTGAAAGATGTGTATGATAAGACCTTCAAGTCT
GTGAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATTTCTCATGCTCA
TGGTTGGGCAGGATCAATATTGTAAAAATGGCTAACTTGCCAAAAGCAAT
CTACAGATTCAATGCAATCCCCATTAAAATTACTACTCAATTTGTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCTTCACAATTAGTCACAGA
AGAAAGACAAGAATTTGATACCCCTTTCTCAAACTTAAAGAAGAAATGAA
GTTAATTTTTAATGTAAATATCAAAGGCCTTGGAGCTAGCTCAGTGATAG
AATTCTTGCATAGCACATGTAAGGCTTTTAGTTCAATTTCCTACCTAAAT
ACATAAAAAAGTAGGACAGTAAATATATATTGATATTTTGATAGTAGTTA
TATTTTAATATATTTCATATTTTAATAGTTAATTTTTAAATATCTAACAA
TATCAAATATTTTATGACAAGCTTATGCTATTAACAGAAGGGTCATTACA
CATTCTCATTAAATCTGAGAAAGAAATAACTTCTCGGAGACAGGGTCATG
GATAGAGATGATTTTTGTGCCAAATATTAATCATAGCACTCTGGAGGTAA
AGGCAGATGGCATTCTTTGAGCCCAAGGCCAGTCTGATATACATAGTTAG
GTTCAAATTTGCCAAGCCCACAAAGGAAGACCCTGTCCCAGGGAATTAAG
TAAATAGGAAGAAATGATATTTGTTATTGTTGTTTTTTTTTTTAAATAGC
AACACCGTAGTAAGGGAATTGTGTATAGATATAAATAAACCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_g14.g1 MSMg01no190_g14.g1 CHROMAT_FILE:
MSMg01no190_g14.g1 PHD_FILE: MSMg01no190_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:39 2005
         (619 letters)



>mm_chr2_98292652_98293670
          Length = 1019

 Score = 1122 bits (580), Expect = 0.0
 Identities = 610/620 (98%), Gaps = 1/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctcttcacaattagtcacagaagaaagacaagaatttgatacccctttctcaaactt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 200 tttctcttcacaattagtcacagaagaaagacaagaatttcatacccctttctcaaactt 259

                                                                       
Query: 61  aaagaagaaatgaagttaatttttaatgtaaatatcaaaggccttggagctagctcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagaagaaatgaagttaatttttaatgtaaatatcaaaggccttggagctagctcagtg 319

                                                                       
Query: 121 atagaattcttgcatagcacatgtaaggcttttagttcaatttcctacctaaatacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagaattcttgcatagcacatgtaaggcttttagttcaatttcctacctaaatacataa 379

                                                                       
Query: 181 aaaagtaggacagtaaatatatattgatattttgatagtagttatattttaatatatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaagtaggacagtaaatatatattgatattttgatagtagttatattttaatatatttc 439

                                                                       
Query: 241 atattttaatagttaatttttaaatatctaacaatatcaaatattttatgacaagcttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 440 atattttaatagttaatttttaaatatctaacaatatcaaatattttatgagaagtttat 499

                                                                       
Query: 301 gctattaacagaagggtcattacacattctcattaaatctgagaaagaaataacttctcg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 500 gctattaacagaagggtcattacacattctcattaaatctgtgaaagaaataacttctca 559

                                                                       
Query: 361 gagacagggtcatggatagagatgattttt-gtgccaaatattaatcatagcactctgga 419
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 gagacagggtcatggttagagatgattttttgtgccaaatattaatcatagcactctgga 619

                                                                       
Query: 420 ggtaaaggcagatggcattctttgagcccaaggccagtctgatatacatagttaggttca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggtaaaggcagatggcattctttgagcccaaggccagtctgatatacatagttaggttca 679

                                                                       
Query: 480 aatttgccaagcccacaaaggaagaccctgtcccagggaattaagtaaataggaagaaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatttgccaagcccacaaaggaagaccctgtcccagggaattaagtaaataggaagaaat 739

                                                                       
Query: 540 gatatttgttattgttgtttttttttttaaatagcaacaccgtagtaagggaattgtgta 599
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 740 gatatttgttattgttgtttttttttttaaatagtaacaccgtagtaagggaattgtgca 799

                               
Query: 600 tagatataaataaacccata 619
           ||||||||||||||| ||||
Sbjct: 800 tagatataaataaacacata 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)