BAC Information

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BAC

Clone NameMSMg01-190H14
Chromosome2 (Build37)
Map Location 121,429,560 - 121,429,874
singlet/doubletsinglet
Overlap geneFrmd5
Upstream geneLrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190H14.T7 (MSMg01no190_h14.b1)MSMg01-190H14.TJ (MSMg01no190_h14.g1)
ACCAG380807AG380808
length712918
length of high quality
(start - end)
318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no190_h14.b1 PHD_FILE: MSMg01no190_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:44 2005CHROMAT_FILE: MSMg01no190_h14.g1 PHD_FILE: MSMg01no190_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTTCCAGGGGATCCAATGCCTCTTCTGGCCCCTGTGGGTACTAG
GCACACATATAGCACACAGGTATATATAGAAGCAAAACACCCATATACAG
TAAAAAAAAAATTCTGCTTCTCCTCAGACCTGGCTGTTGTGGTTTTCTTT
CCTTCTCACAATAAAGCACCTTGCCCTCCCCTTCTTTAATTAAGGGTCTC
TTAATTATAGTGGCCTCTTCCTCCTGGGATTGCTAGAATTACAGGCGTGT
GTTACCATGTGTGGCTCAGAGTTTACACTGCACTGGGGGTCTCTGTGATT
GACATCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTTCTCTTTTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTATCTCTATCACCCTATCTCTCCCTCCCCTTCTTCTTTCTATGAGAT
TATTTTTTTCTGTATCGCCCCCCCTGTTTTATTCTTCCCCCTTTATACCC
CCCCTTTTTTTATTTTCCCCCAATATCAGCCTTTATTTTGGCTCCACCCT
ATTTGTTGCCAACTTCATATTGTCGTGCCCCCCCTTTTTACATTCTTAAT
AACTACTCCACN
AATATATGTTTACTTTAAAAAAGACGCGGGGTAAAAAAATTTGGAAGAAA
AGGAAGAGGATGAAAAAAGTTTTGAAATTCGGGGATGTTTAAAAAAGGGG
AAAAAGAGAAAAAGAGGGTGTGGGGGGGGGGGAGAGGAGGAAGGGGGGAG
AGGGAAGAGGGGGTGGGAGAGTATTAAAAGTTTAAAAGAAAAGGGAATGG
GGGAAGGGAAAATGAGAAAAAAAGAAAAGAATAATTAGTAATAACAAGAA
AAAAGATAGGGGAAGGGGAGTTTGTTGGGGTGAGGGATCCTGAAGAGGCG
AAAGAAGGATATAAAATGGAGGGAAGAGGAAGTGAAGAGAAAGGAATGAA
AAAGAAAAAACGGGATTTTTTTTGAAGGGAAAAGAATAAGCGAGGGAAGA
AAGAGAAGAAGGGGGTTTTTGTTTTTTTCCCCCCCCCCCCCCCCCGATAT
AAAGAAAAAGAAGAGGAGAAAGGTGTGAAAAAAAAAAGGTGGTGGCGAAA
GAAAAAAAAAAAAGGTCGGGTATGTTGGGGGGGGGGGGGGGATTAAAGTT
GAGAGGAAGGAAAATTAATAGAAAGTGAGAGTAAAGAGAGAGGGGTGTTT
GTTTGTTGATTGTGGGATGTATGCAATATTATTTAATTCTTTCTAGTGTT
GATAGGAAAAGAAGGGAGGGGTTGTGGGGGCGTAAAAATTAGTGGATATA
GGTGGTGTTGCGAATTCGCCGGGACGAGGAGTGGGTGATAATATCGTGTA
ACGTGAGAGTGGGCGAAATAATAGAGAACGGAAGTTAATGGAGGAATGAT
TTATATATGAGATGTTGAATTATAAGAGTTGATGATAAAGAAAAAAAAAT
AATAATAAATAAACAAAGAAACGAGGGAATATTGGAAGGTGTCAGAGAGG
TGGGGTGAGAGAGTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_h14.b1 MSMg01no190_h14.b1 CHROMAT_FILE:
MSMg01no190_h14.b1 PHD_FILE: MSMg01no190_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:44 2005
         (318 letters)



>mm_chr2_121429357_121430074
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagttccaggggatccaatgcctcttctggcccctgtgggtactaggcacaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagttccaggggatccaatgcctcttctggcccctgtgggtactaggcacaca 263

                                                                       
Query: 64  tatagcacacaggtatatatagaagcaaaacacccatatacagtaaaaaaaaaattctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatagcacacaggtatatatagaagcaaaacacccatatacagtaaaaaaaaaattctgc 323

                                                                       
Query: 124 ttctcctcagacctggctgttgtggttttctttccttctcacaataaagcaccttgccct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 ttctcctcagacctggctgttgtggttttctttccttctcacaataaagtaccttgccct 383

                                                                       
Query: 184 ccccttctttaattaagggtctcttaattatagtggcctcttcctcctgggattgctaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccccttctttaattaagggtctcttaattatagtggcctcttcctcctgggattgctaga 443

                                                                       
Query: 244 attacaggcgtgtgttaccatgtgtggctcagagtttacactgcactgggggtctctgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attacaggcgtgtgttaccatgtgtggctcagagtttacactgcactgggggtctctgtg 503

                          
Query: 304 attgacatctcttct 318
           |||||||||||||||
Sbjct: 504 attgacatctcttct 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)