BAC Information

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BAC

Clone NameMSMg01-191A12
Chromosome2 (Build37)
Map Location 136,580,785 - 136,581,089
singlet/doubletsinglet
Overlap geneSnap25
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, LOC668911
Downstream geneMkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191A12.T7 (MSMg01no191_a12.b1)MSMg01-191A12.TJ (MSMg01no191_a12.g1)
ACCAG381186AG381187
length782771
length of high quality
(start - end)
308 (102 - 409)296 (134 - 429)
definitionCHROMAT_FILE: MSMg01no191_a12.b1 PHD_FILE: MSMg01no191_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:29 2005CHROMAT_FILE: MSMg01no191_a12.g1 PHD_FILE: MSMg01no191_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCCCCTTTTTTTTATTTTTTCCTCTCTTTTTTGTGNGCNTAATTTTNN
NTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATTTTCTGTTCATCAGTGTATCCCTAGTACTCTTAGTA
AGTACTTGAGAATTGAGAAGGATGGAAAGGAAGAAAGAAGGGTGCTCTGG
AACAATTAGTGTCCTCTTACTTGCATTTGTTTCATGTGAAATGTCAAGGA
TAGCCACAAAGTGGGCTGGTCACATTTTAAGGCCCTGGACTCACTCCACT
TTGGAATAAGACTTGTTTACCTGCACACAATCTTGACAACCTCTAATGAC
AATTCTAGATGCTTCTAAATATGGTGCCCTGCTACCCACAAACAAATAGT
AATGGTCTAGTATTTTTGTTCCCCACACAAACCCCCAAATTTCATAATAA
TTATACCATGTATTTTAGCCCGACAAAAAATAAAAAAATGCTTGGGGGGG
GGGGTAATACATAATCCTAATAAATGTCAGCAATAGTGACAAAATAGAGA
TTAGCAATCTCTTGGACCTGTAAAGGCTATGGAGCACACTCTTGTCTAAT
AACTAGGAGAATGTGACAATGTGTGTGATAACTCCACTGCCTCTTTTTCT
CTTTTTTTTGAGATGTGGATCACTGATAATATATGAATGTTGCCAAACTT
GTTATATATCTTCATCATATTTGTCTTGTGGCGAAGAATTTTCCCCCTTA
CAGACTTGGGGCGGTACTTTAACTACTTCAAC
CTCTTTTTTTTTTCTCAACTGACTCCCGTTCAACATTCCCTTTTATATTN
TNTTCATCAATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATGAAAATAATTTC
AGAGAAGGTCATTCCGGCAGAAATAAATGACAAGAAAAAAATAATCATAG
GCACATTGTTGTGATTAAAAGTAAGAAAGGTGGCTCAGCAGTTAAGAGCA
CTGGCTGCTGTTCCACAGGACCTAGGTTCAATTTCTAACACCCACATGGC
AGCTTACAGCTGTCTGTAACTCTACTTCCAGGGATGTGACACTTTTTCTG
GTCTCCACAGGTACCAGGCAGGCATGTATATATCCATGCTGGAAAAACAC
ACATACATATAAACTATTATTTTTTGCCCCCCCCCCCCTACTTTAGCGGG
TATGTCAGCAGACAGAGCAGGAACCCCTGATAGCTACAAAAGAAGAGAGG
AAAGGCAGTGCATAAAAGAATGAAGTTAGTGACTCTCCTGGGACTTCTGC
GGGCCTCACCGGACATAGAGCAGTCAAACTACCACTCTAAGTGAGTCCAA
CACTATTAACATCTTACTAATCAAAAGAAAAGTTGGGGCAAGAAAAAAGT
GGGTAATTAGATCACATATATTTAAAAGCCTTCTTTACTCAAAATACATG
TTCGGTCTTATGGCCATGTTAGGAAATCTCCGCATGATAGCTATTTGAAA
TCAACACTAAAACCTGCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_a12.b1 MSMg01no191_a12.b1 CHROMAT_FILE:
MSMg01no191_a12.b1 PHD_FILE: MSMg01no191_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:29 2005
         (308 letters)



>mm_chr2_136580581_136581289
          Length = 709

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%), Gaps = 1/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattca-attttctgttcatcagtgtatccctagtactcttagtaagtacttgagaatt 63
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcacattttctgttcatcagtgtatccctagtactctttgtaagtacttgagaatt 264

                                                                       
Query: 64  gagaaggatggaaaggaagaaagaagggtgctctggaacaattagtgtcctcttacttgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaaggatggaaaggaagaaagaagggtgctctggaacaattagtgtcctcttacttgc 324

                                                                       
Query: 124 atttgtttcatgtgaaatgtcaaggatagccacaaagtgggctggtcacattttaaggcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgtttcatgtgaaatgtcaaggatagccacaaagtgggctggtcacattttaaggcc 384

                                                                       
Query: 184 ctggactcactccactttggaataagacttgtttacctgcacacaatcttgacaacctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggactcactccactttggaataagacttgtttacctgcacacaatcttgacaacctct 444

                                                                       
Query: 244 aatgacaattctagatgcttctaaatatggtgccctgctacccacaaacaaatagtaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgacaattctagatgcttctaaatatggtgccctgctacccacaaacaaatagtaatg 504

                
Query: 304 gtcta 308
           |||||
Sbjct: 505 gtcta 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space:   209300
Effective search space used:   209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)