BAC Information

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BAC

Clone NameMSMg01-191F03
Chromosome2 (Build37)
Map Location 105,175,566 - 105,243,061
singlet/doubletdoublet
Overlap gene0610012H03Rik, Rcn1
Upstream geneD430041D05Rik, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F03.T7 (MSMg01no191_f03.b1)MSMg01-191F03.TJ (MSMg01no191_f03.g1)
ACCAG381382AG381383
length807747
length of high quality
(start - end)		273 (104 - 376)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no191_f03.b1 PHD_FILE: MSMg01no191_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:53 2005CHROMAT_FILE: MSMg01no191_f03.g1 PHD_FILE: MSMg01no191_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,242,792 - 105,243,061)(105,175,566 - 105,175,845)
sequence
TTTTATTTTCTTTTTTTTTNCTACTTTCTCAATTCTCATTTTTTTTTTTN
NNNNGCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGCATTTTGAGTTAGAAATGATTGGTTCTGAACGAAGATTTAAG
GGAAAACATGATGGAATAAGTGACACTTCAGTGGAGTTTTGACAACTTTC
TGTGACTTTGAATGGTGGAGAGGCAGGAGGTTGGAGCTTTTAAACACACA
GCAGTTAATTACAATTCCTCGTGGCATCTATAACCATCTGGCTTGTTCTT
TCCTGACAGACCCTCAGGATGTGTTTTTGAAGCTTCTGCATATTTTTTTC
AACCCCATGGAGTCGATTTTGATTGGTCTAATCTATCATGGAATTTCCAT
ACCTTTCTGGCCTTTTTTTTTTCCCCCCCCCCCCCCCTGGAATGCTTTCT
TTCTAATACAGGATTGATATTTTTCCCCCTACAAAAAGAAAGAATACCTT
ACAGCTTTCATATCTGGTTTCTCGTTGCCCTTGATTCTTTCTGCAAGATC
CAATCCGAACGTGAATTAACTCAAGACCTTCTCGTATTCCTAATGATCGG
TGTCACCCTGCTTAGAGCTTCTCGTCTCAACCACCTTACCTCACCCCGCC
CTCTGTTATATCTGCATCTGCTACTTAATCCTCCCTCATTTCTGCTGTGA
CTTCTCCTTACAATCCACCTCTCATTCATTAATACCCCCCAATTAAGTCT
TTCAATACCCTTAAACCTTGTTGGTGTCTATAGCCATTAACACACATACC
AATTATA

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTAATGAATCTTTGACTTGC
TTTTCTTAGGTTTGTTTAAAAACAATCATACTTTTATCCAGCCCTTAAGT
TTATATGTGTCTCTTTCTCTTTCCCTGTGTGTGTGTGTGTGTGTGGGGGT
GTCCTTTAAGGGATCAGCAGTCATGAGTGTCAGACAATGGGAGGGCAAGG
TGACAGAACAATTAAATAAACTCAATACAAGCAGAGCTTGGAGGACACCA
AGTTATAAGACTCCATGTTTGAAGTTAGCGCCATGCCCAACATCAGAGGA
AGCCAATCATTTATTTTTGCCCCCACCCCCCCCTGCCATCACCCATCTCA
ACTACAAGAGAGGTTCTGAGTTTCAAAACATTCCATGTGGAAAAAAAGAC
GGCCCATGACCAAGACAAAGCAGCCAGGAAAGAGAACTGCAAAGCCTCCG
GTTGGTTGCTGTCTGGCTTGGAAGGCTTCCATCTGAACTCTCATGCGGTT
TTGTCCTGTTTGTGTCGCCGAGGCCCACCATCCAGTGAAAGGCCCTATGA
AGTCTTGGGTTCTGCTTTCCAGAGATTACACTCAAGGCTAAGGTCTTGTT
GTGACGCAAAATTCTCTAACCCCTAGTTGCGAAAGTACTCTGTCTTGTTT
TCCCTACTCTGGCTGTAACCCATCCTCCTGCCATGTTTCCACCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f03.b1 MSMg01no191_f03.b1 CHROMAT_FILE:
MSMg01no191_f03.b1 PHD_FILE: MSMg01no191_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:53 2005
         (273 letters)



>mm_chr2_105242589_105243261
          Length = 673

 Score =  476 bits (246), Expect = e-139
 Identities = 264/270 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggcattttgagttagaaatgattggttctgaacgaagatttaagggaaaacatgatggaa 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 473 ggcattttgagttagaaatgattggttctgatcgaagatttaagggaaaacatgatggaa 414

                                                                       
Query: 64  taagtgacacttcagtggagttttgacaactttctgtgactttgaatggtggagaggcag 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taagtgacacttcagtggatttttgacaactttctgtgactttgaatggtggagaggcag 354

                                                                       
Query: 124 gaggttggagcttttaaacacacagcagttaattacaattcctcgtggcatctataacca 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 353 gaggttggagcttttaaacacacagcagttaattacaattcctcatggcatctataacca 294

                                                                       
Query: 184 tctggcttgttctttcctgacagaccctcaggatgtgtttttgaagcttctgcatatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 293 tctggcttgttctttcctgacagaccctcaggatgtgtttttgaagcttttgtatatgtt 234

                                         
Query: 244 tttcaaccccatggagtcgattttgattgg 273
           ||||||||||||||||||||||||||||||
Sbjct: 233 tttcaaccccatggagtcgattttgattgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no191_f03.g1 MSMg01no191_f03.g1 CHROMAT_FILE:
MSMg01no191_f03.g1 PHD_FILE: MSMg01no191_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:53 2005
         (283 letters)



>mm_chr2_105175364_105176046
          Length = 683

 Score =  485 bits (251), Expect = e-142
 Identities = 274/285 (96%), Gaps = 8/285 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttaatgaatctttgacttgcttttcttaggtttgtttaaaaacaatcatacttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tggttaatgaatctttgacttgcttttcttaggtttgtttaaaaacaatcatacttttat 262

                                                                       
Query: 61  ccagcccttaagtttatatgtgtctctttctctttccctgtgtgtgtgtgtgtgtgtggg 120
           |||| | ||||||||    ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 ccagtc-ttaagttt----gtgtctctttctctttccctgtgtgtgtgtgtgtgtggggg 317

                                                                       
Query: 121 gg---tgtcctttaagggatcagcagtcatgagtgtcagacaatgggagggcaaggtgac 177
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggggtgtcctttaagggatcagcagtcatgagtgtcagacaatgggagggcaaggtgac 377

                                                                       
Query: 178 agaacaattaaataaactcaatacaagcagagcttggaggacaccaagttataagactcc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agaacaattaaataaactcaatacaagcagagcttggaggacaccaagttataagactcc 437

                                                        
Query: 238 atgtttgaagttagcgccatgcccaacatcagaggaagccaatca 282
           ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 atgtttgaagttagcaccatgcccaacatcagaggaagccaatca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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