BAC Information

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BAC

Clone NameMSMg01-191H09
Chromosome2 (Build37)
Map Location 56,401,212 - 56,401,494
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191H09.T7 (MSMg01no191_h09.b1)MSMg01-191H09.TJ (MSMg01no191_h09.g1)
ACCAG381469AG381470
length692729
length of high quality
(start - end)
264 (5 - 268)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_h09.b1 PHD_FILE: MSMg01no191_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:04 2005CHROMAT_FILE: MSMg01no191_h09.g1 PHD_FILE: MSMg01no191_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGATCCGCGGAATTCCTCCCACAATGGCCCATTAATCTTTCTTTACAG
AATTCAACTTCTTTTCTAGTCCACATTCCTCCAAAAAAAAAAACCAATAT
TTTCAGGTTGTTCATGGCTATAGCCTATTCTCTGGTACTCATTTCAATTA
GTTACATGTCTGTTGTTCTGATTAAACAACAAACTGAGACAGCTTATAGA
AAGAAGAGTTTATTTGACAATAGCTCCAAAAGGGAAGTACTTAATGGCAG
TGAGTATGTGACAGCAGTCCACTGGAGCATTAAGCTAAGAAATCATATCT
TCAGATTCAAACCCACTTTTTTATTTCCGCGAAACCAGACCGAAATCATA
CTCTTTCAAAGTCCACCCTAGTATACTACTTCCTCCAAAAAAACTCCATT
TCCCGGATGTTCTATAATCTCCCCATAGAACATTGCTAACTGGAACCATG
CTCTCAAATACCTGAGACTACACGAGCATTGCTCATTCTAATCACCATAA
CTGCCAAACACATATACTGCCGATGTCCTGGAATATTTTAACACTTGTGA
TGATTAATATCCCTAAACAATACATGTATACATTAACTCTGAATCTATCG
AATTTTCCTTCCAATGCTCCACATCCCCTGTTTCCGCGTTTTTTAAGAAA
TGCCCCCCTCCTTTTTATTCTTATTTTTTAAAATCAATTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGATATTGGAACTACATCTTCC
CCAAATGCATTTTTCACCATTATTTTAAAGACACCTCTTTTTTTTTCTCT
TCTGCCTCTCATACATGTCTAAGCACTTAATCTGAAAATCAGAACATCTA
AGTCAGAGCCCTTCTACACCATAACTAGCTGTAATGTCTTGAATATATTT
CTCTATCTCTTAGTTTCTTGATGTGCAGTGAGTGATGTAAGTTTTCTCCA
GATAAAAAACATTGGATTCCAGTACATTTTTAATACCTAGCCTCTCTAAT
TCAAAAATGTGTTGCTGCTCCGCTCCTAGGCTGTTGAGTGGAGGTAGATG
GCCAGGGTTCCAAGAAACAACACTCATGTATTCAGTGGTTCTTATTACAG
TATGCTACTCATGTGAGCTGCTTCCACTCACTCACTACCTTGAAAATGAT
TATAGCCATAACACAGATGATGGATCTGCTCAGTTATTCAGTTTTCAGCT
GGACTGGATTCGGGAGATATTTACATTGAGTTCACTATTGTTCAACCTTC
TCAAAAGAGCAGATATGATAACAATATCCGCACGGGTGTTTGTAAAGAAT
TAATGTTACTCTTCCTAAATTGGTAAGCTTTATAAAATGCTTTCAACATT
TTTATAGCCATTAATAGATACTTTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_h09.g1 MSMg01no191_h09.g1 CHROMAT_FILE:
MSMg01no191_h09.g1 PHD_FILE: MSMg01no191_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:04 2005
         (283 letters)



>mm_chr2_56401012_56401694
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatattggaactacatcttccccaaatgcatttttcaccattattttaaagacacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggatattggaactacatcttccccaaatgcatttttcaccattattttaaagacacct 260

                                                                       
Query: 61  ctttttttttctcttctgcctctcatacatgtctaagcacttaatctgaaaatcagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttttttctcttctgcctctcatacatgtctaagcacttaatctgaaaatcagaaca 320

                                                                       
Query: 121 tctaagtcagagcccttctacaccataactagctgtaatgtcttgaatatatttctctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaagtcagagcccttctacaccataactagctgtaatgtcttgaatatatttctctat 380

                                                                       
Query: 181 ctcttagtttcttgatgtgcagtgagtgatgtaagttttctccagataaaaaacattgga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttagtttcttgatgtgcaatgagtgatgtaagttttctccagataaaaaacattgga 440

                                                      
Query: 241 ttccagtacatttttaatacctagcctctctaattcaaaaatg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccagtacatttttaatacctagcctctctaattcaaaaatg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)