BAC Information

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BAC

Clone NameMSMg01-191L03
Chromosome2 (Build37)
Map Location 121,147,443 - 121,184,023
singlet/doubletdoublet
Overlap geneHisppd2a
Upstream geneVps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a
Downstream geneCkmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191L03.T7 (MSMg01no191_l03.b1)MSMg01-191L03.TJ (MSMg01no191_l03.g1)
ACCAG381621AG381622
length699731
length of high quality
(start - end)
310 (22 - 331)286 (87 - 372)
definitionCHROMAT_FILE: MSMg01no191_l03.b1 PHD_FILE: MSMg01no191_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:24 2005CHROMAT_FILE: MSMg01no191_l03.g1 PHD_FILE: MSMg01no191_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,147,443 - 121,147,747)(121,183,738 - 121,184,023)
sequence
XXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCACTTGGCGCAAGGAA
AGGGCATTGTGCAGTGTCTCCAGGGGGTAGATGGTAGGTACCATGGAGCA
CCCTTCAAATCCTGTTGGAAAAGAGATGAACAAAGTCAATGTTATTCCCA
CCAGATACACTCCAATTGGCCAAGGAAGGATGGAGAGTCCCTGAGAGCCA
TCAAGAGGATCTGTGGCTTTTAGAGGATGGGGTATCCAAGATTTCCAGGG
GGAAGGAACTCTTTGGAGCCCTTCAGGAAGTCTATTTATGTCATCTCCAA
TTTTCCTAAAATGTTCACCCATTAACGCCTTTTTTNGTTCTTAATCACCC
CCCACCCTACCTATGGAGGGCCTACAGCATCCTGTGGAATAACAAGAGCA
AAAAAAAGCTCTTGTACTTGCGGGGGCAATAAAACCAGGATCAAGAGGCT
AGGGGTTGTAACCGTAAATCTAACATGAGGCGCTGGTTTCATGGAGCTCA
GAAAGACTTCCGGGACTGTGTTGATCACCTAACGTAACTCATTAGAATAT
TAATTGACAAGGTCTGGAATCCAAGGAGGGTCTCATGCCAACTTAACACG
CTCTGTATAATTCCCTTCAATTCCCGGTCTGTCCATTGTCAACTTGTAAG
CCTATGAAACCTCCACCCGTGTTCACTACCCTTTTTATAATCCCTTTAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTCTCCATTTT
CCCCAGGAGAGTCAGCCGCAGGAAAACCACAGAATAAACAGATAGAGGAG
GAAGACTGAGCGAGCTCAGGGGAAAGACAGCACAGCCTCAAGGTCACCTT
CCCCTAAGAACCAGGAAGAGCACCAGGGAACTCCCAGCTACACCTATGCT
TTCCTAATAAGGTTGAGAAAGGATCCCTTAAGAATCAGAAAGCTATTGGC
TCTTATCCTGTCTATTCTGTCTCCCAAACTCACTGCCTCCAAGTCTTCAG
CTTGGCTATTTCTTGCCTCTCATCTGCGGACCTGCTTTTTTTTTCTTTTT
TTCCTCTACTCTAACCCCTGCTTCACCTTTGATCTTTTATTTCTCTTCTT
CTTTTCCAGGCTTAAATCTGTTTGCTGTTCGAAGGACTCTTCCTGAGTAG
TGTCTGAAAGCCTACCTGTTGATTGCTCTGGGTGTGGGGCTGGGGTTGGG
CAGGGAATGGTGAGTTTCTTCTTCCTTCTCTTCCTTCTTCTCTGCAGCTG
GCAGTTCCTGGACTGGAGGGGGAATATAAAGAGAGGAGGAGGGTGTGNTG
ANATNNTNNNTNTNNTTTTGGTTTTTTTTGGTTTTTTTTNTTNTTTTTTT
TTTTTTTTTTTTNNTNTGTTTTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_l03.b1 MSMg01no191_l03.b1 CHROMAT_FILE:
MSMg01no191_l03.b1 PHD_FILE: MSMg01no191_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:24 2005
         (310 letters)



>mm_chr2_121147239_121147948
          Length = 710

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcacttggcgcaaggaaagggcattgtgcagtgtctccagggggtagatggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcacttggcgcaaggaaagggcattgtgcagtgtctccagggggtagatggt 264

                                                                       
Query: 65  aggtaccatggagcacccttcaaatcctgttggaaaagagatgaacaaagtcaatgttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtaccatggagcacccttcaaatcctgttggaaaagagatgaacaaagtcaatgttat 324

                                                                       
Query: 125 tcccaccagatacactccaattggccaaggaaggatggagagtccctgagagccatcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcccaccagatacactccaattggccaaggaaggatggagagtccctgagagccatcaag 384

                                                                       
Query: 185 aggatctgtggcttttagaggatggggtatccaagatttccagggggaaggaactctttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggatctgtggcttttagaggatggggtatccaagatttccagggggaaggaactctttg 444

                                                                       
Query: 245 gagcccttcaggaagtctatttatgtcatctccaattttcctaaaatgttcacccattaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagcccttcaggaagtctatttatgtcatctccaattttcctaaaatgttcacccattaa 504

                
Query: 305 cgcct 309
           |||||
Sbjct: 505 cgcct 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no191_l03.g1 MSMg01no191_l03.g1 CHROMAT_FILE:
MSMg01no191_l03.g1 PHD_FILE: MSMg01no191_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:24 2005
         (286 letters)



>mm_chr2_121183538_121184223
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctctccattttccccaggagagtcagccgcaggaaaaccacagaataaacagataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 catctctccattttccccaggagagtcagccgcaggaaaaccacagaataaacagataga 427

                                                                       
Query: 61  ggaggaagactgagcgagctcaggggaaagacagcacagcctcaaggtcaccttccccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggaggaagactgagcgagctcaggggaaagacagcacagcctcaaggtcaccttccccta 367

                                                                       
Query: 121 agaaccaggaagagcaccagggaactcccagctacacctatgctttcctaataaggttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 366 agaaccaggaagagcaccagggaactcccagctacacctatgctttcctaataagattga 307

                                                                       
Query: 181 gaaaggatcccttaagaatcagaaagctattggctcttatcctgtctattctgtctccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaaaggatcccttaagaatcagaaagctattggctcttatcctgtctattctgtctccca 247

                                                         
Query: 241 aactcactgcctccaagtcttcagcttggctatttcttgcctctca 286
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 246 aactcactgcctccaagtcttcagcttggctatttcctgcctctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)