BAC Information

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BAC

Clone NameMSMg01-191L12
Chromosome2 (Build37)
Map Location 139,905,616 - 139,905,767
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365
Downstream geneEsf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191L12.T7 (MSMg01no191_l12.b1)MSMg01-191L12.TJ (MSMg01no191_l12.g1)
ACCAG381635AG381636
length722765
length of high quality
(start - end)
315 (45 - 359)154 (74 - 227)
definitionCHROMAT_FILE: MSMg01no191_l12.b1 PHD_FILE: MSMg01no191_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:26 2005CHROMAT_FILE: MSMg01no191_l12.g1 PHD_FILE: MSMg01no191_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTCACAGCCAATTAAGTATTACACAAAAACAAGAGGATGCAGCA
TGCTGGCTGACAGGGTTATGTTCAACTAACGTTGTTATATTCAGTGTGGT
GGTGCCACCCTCAGTGGGATGAGACCTCCTACACTAACAATCAAAATAAC
CCCCATAGACATGCCAACAGGCCAATCTATAATGCAGACAAATTCTCAGG
AAAGTTTTTTTTTCCCCCTCAGATACTTCTAGATTATGTCAAACTGACAG
TTAAATCTACCCACGGCAGTTAGTGTGGTAGTGAATGGTGCTTCCATTAC
TAGGCACTTATTGTTGAACACCACTACCTACAGTGCCTTTCATATCTTGG
CTCCAGCAAAGTTTGCTTCTTTCTAACTACTGCACAGTTCAGTTTTCAAG
TTTTTTCTTTGCAGTCTAGAGGTATTCTGCTGGCCAGCTCTCAGCATATA
GTCCTGTGACCCTTGCTTTGGGTTCCATAGGAGTGTACTTCACGTAAAGT
CTGGAAGTACCAAGCAAACAACTGAGCAAGGCTGGTGAAATTGGGGTCCC
TATTTTTAATGCCATATTTCATCTCTATGAGAAGACTTTCTTGTCTCTTC
TGCTGTCACGTACAAATTTTCTCTCCCTCTCAAAAAGGGAGAATGCTGAT
GCTCTTAGGCTATATGTATTGG
CGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTCGTACTCGGTAGGNGACC
TATAGAATGTCAGCAGGGATCCGGACAGCCAGTGCTACACAGAGAAACCC
TGTCTTGAAACAACCCCAACAAAACAAAACAAAAATAACGTTTTTGTTAT
TTTATTATTTAACGTTTTGTTTAACACTGAGTGATATGTGTTATAAAACT
TGGTATGTGTGTGTGGGGGGGGGNNNNNNNNNNNNNNNNCTTTTTTTTTN
CCNCNNNNNCGNCNNGCGCGCNGCCGGCGCGCGCCGGGCGGCGGCCGCCC
CCGCGCTTTCAATAAATTTCAGACCCGCAAAAGAGGAAAGGGGAGGGATT
TTTTTTATTTTCCCCACAGCCCCCCCCCAGGGAAAGAGAGAGAGAGGGGG
GGGGGGGGGGNNAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGG
GGGNNNNNNNNNNGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGAGNGGGG
AGGGGGAGAAAAGAAAAAAAAAGAAAAAAAAAGAAGAAAAAAAAGGAGAA
GAAGAAAGAAGAAAAAAGGAAAAAAAGAAAAAGAGAGAGGAAGAAGAGAA
AAGAAGAAAGAGAAAAAAAAAGAGAGAAGGAAAAAGAAGAAAAAAAGAAA
AAAGGAAAAAAGAGAAGAAGAAATTTTTTTTTTTTTTTTATAAAGAAAGA
AAAGAAATTATAATAATATATTTAGTATTTATGTTAAAAGTAATTATATT
TGTAGTTTTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_l12.g1 MSMg01no191_l12.g1 CHROMAT_FILE:
MSMg01no191_l12.g1 PHD_FILE: MSMg01no191_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:26 2005
         (154 letters)



>mm_chr2_139905372_139905926
          Length = 555

 Score =  248 bits (128), Expect = 2e-70
 Identities = 146/152 (96%), Gaps = 2/152 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagccagtgctacacagagaaaccctgtcttgaaac-aaccccaacaaaacaaaacaa 59
           ||||||||| |||||||||||||||||||||||||||| || |  |||||||||||||||
Sbjct: 396 gacagccagggctacacagagaaaccctgtcttgaaacaaaacaaaacaaaacaaaacaa 337

                                                                       
Query: 60  aaataacgtttttgttattttattatttaacgttttgtttaacactgagtgatatgtgtt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaataacgtttttgttattttattatttaacgttttgtttaacactgagtgatatgtgtt 277

                                           
Query: 120 ataaaacttggtatgtgtgtgtg-gggggggg 150
           ||||||||||||||||||||||| ||||||||
Sbjct: 276 ataaaacttggtatgtgtgtgtgtgggggggg 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 555
Length adjustment: 8
Effective length of query: 146
Effective length of database: 547
Effective search space:    79862
Effective search space used:    79862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)