BAC Information

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BAC

Clone NameMSMg01-191N23
Chromosome2 (Build37)
Map Location 80,834,082 - 80,834,390
singlet/doubletsinglet
Overlap geneLOC100040655
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624
Downstream geneLOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191N23.T7 (MSMg01no191_n23.b1)MSMg01-191N23.TJ (MSMg01no191_n23.g1)
ACCAG381733AG381734
length723753
length of high quality
(start - end)
312 (46 - 357)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_n23.b1 PHD_FILE: MSMg01no191_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:38 2005CHROMAT_FILE: MSMg01no191_n23.g1 PHD_FILE: MSMg01no191_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCACATCTTAGAGCCCAACTCAGTTATCTCCTGGCACTTAACA
GCTGCATGAGTGACTCCCAGCAACAAAACACAATGAACCACTCCTTTACG
TGTTGCTGCAAGAAATAATAATCATGGCTGTTGTTAGGGCAACTAACAAA
ATGTTGTGAGTTTTGTTGGATTACAACTGACAAGCAGCTCTGTAGGCTCT
CGAGGGGGCAGAGAATTTTGCTTTTACTCACGAATTTGGACTCTGCTTGA
AGTTATTTGATGTTTTTTCTTTTGTTGAAGAGTTTTATTCTACTTGGGAG
ATGCTCTTACTGGATCTCTGGACTGNACCCAGGCAGTATGGATGGGTACA
ACATAAGCTCTTATGCGTTAAAAAATAAAAACACCTGACTCTGTGCCCAC
AATATGGGCAGAATTAGGGGGAAGGTAATAATTTGTGAAAAGAGAAAGAG
TGAGCAGAAATACCACTCTTCTCTTATGCCACGCATAGTCAAGTGACTGC
TGTATCAATACATTAAAATTACTGGGACTCTGGTAAAGTGAAATATAGAG
ATAGCATCACCTTTTTAACCTTATTCATCTCATTCACTCTGAACCCGAGA
CTACTGTGTATACAACAACCGCTTTCTTGCTGCTCTTGCATACCTTTATG
TGTATTCTTTACTCACAAATATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATA
TATATTAGATATTAGTCCCCTATCTGATTTAGAATAGGGAAAGATCCTTT
CCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTA
CAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCCATTCTTGATCTTAC
TGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCTCCTTAGCCCATAT
CTTTTTGGTTTTTCCCCAACCTNTCCCCTATACGTTTCAGTGTCTCTGGT
TTTATGTGGAGTTCCTTGAAAAAAAAAAATTTAGCCTTGGGGGGGGGAGA
TAGGAATGGATCAATTTCCATCCTTCTACATGGTAACCACCAGTTATGCC
AGCACCATTTGTTGATAATATTGTCTTTTTTCCACAGGATAATTTTAGCT
CCCTTGTCAAAGGTCTAGTGACCATAGGTATGTGGGTTCATTTCTGGGAC
TCCAATTCCACCCTATCGCTCTACTTGTCTGTCACTAACACGAGTACATT
GTTTTGTTTACCACAATTGCTTTGCCGCTCATATTGTTGTTAGGTAGTGT
GTTTTCCCTTGCGGCCTCTTTTTTCCCTTGACTCGACTTTTTTTCTCCCT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_n23.b1 MSMg01no191_n23.b1 CHROMAT_FILE:
MSMg01no191_n23.b1 PHD_FILE: MSMg01no191_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:38 2005
         (312 letters)



>mm_chr2_80833878_80834590
          Length = 713

 Score =  524 bits (271), Expect = e-153
 Identities = 299/313 (95%), Gaps = 9/313 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcacatcttagagcccaactcagttatctcctggcacttaacagctgcatga 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcacatcttagagcccaaatcagttatctcctggcacttaacagctgcatga 264

                                                                       
Query: 65  gtgactcccagcaacaaaacacaatgaaccactcctttacgtgttgctgcaagaaataat 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 gtgactcccagcaacaaaacacaatgaaccactcctttacatgttgctgcaagaaataat 324

                                                                       
Query: 125 aatcatggctgttgttagggcaactaacaaaatgttgtgagttttgttggattacaactg 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcattgctgttgttagggcaactaacaaaatgttgtgagttttgttggattacaactg 384

                                                                       
Query: 185 acaagcagctctgtaggctctcgagggggcagagaattttgcttttactcacgaatttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 385 acaagcagctctgtaggctctcgagggggcagagaattttgcttttactcatgagtttgg 444

                                                                       
Query: 245 actctgcttgaagttatttgatgttttttctttt-----gttgaagagttttattctact 299
           ||||||||||||||||||||||||||||||         |||||||||||||||||||||
Sbjct: 445 actctgcttgaagttatttgatgttttttc----acaaagttgaagagttttattctact 500

                        
Query: 300 tgggagatgctct 312
           |||||||||||||
Sbjct: 501 tgggagatgctct 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)