BAC Information

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BAC

Clone NameMSMg01-192I22
Chromosome2 (Build37)
Map Location 96,323,816 - 96,324,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192I22.T7 (MSMg01no192_i22.b1)MSMg01-192I22.TJ (MSMg01no192_i22.g1)
ACCAG382197AG382198
length1,2041,182
length of high quality
(start - end)
409 (44 - 452)---
definitionCHROMAT_FILE: MSMg01no192_i22.b1 PHD_FILE: MSMg01no192_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:05 2005CHROMAT_FILE: MSMg01no192_i22.g1 PHD_FILE: MSMg01no192_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCTGCCTCAAATGGAAATTGTCTACCAGAAATATGTTTATGTTGTT
CTTAAGGGTCAAGTCTGACAACAGGGATAACTATGCACAAGATTCAGTAC
TGCCTTCAGGCTTGGAGGGAGTATCTGCCCTTCTGCCTATTCATTTTTAC
TCTGTTGAATTTCATCGTCCTCACCTCCTCAAATCTTGAATAACATGGTG
CTAGATCTCCAGTCTTCAAGTTCTAAGTACTTACGGAGTTAAGAGGGAAA
GAGCATGATTCTCCTCACACAGCTTTTGTTATAACCTCAATGTTGTTGCT
TTCAAGGGACTTGCATATCAAAATGGTCAGAAACTATCATGTAAGCATGG
TATACAGGCAAAGCAAGGAAGTGTCTTTTAAAAAAAGAAGGATAAGAAAA
AATTTTTTTTACCCCCTCACAATCATCACTTTTGACCTAAACAAAAGTGG
TATATTGATAAGAAACAAATAGGAATAAGTATTACATGGCAATCAGTATT
AGCCACACTACAAATGAATTCAAATATTTTTAATCCCTATTTGAATATAT
AACCTGAATAATAAGATACTCAAATAAAGGAGAATGAAACCAACAGTCTC
TTTCTTCTTGTTCTTCTCTTGTTCCTCTTATTCTTTTTGTTCTTCTTGTA
CTTCTTGTTCTTTTTGTTCTTACTCTTCTTGTTCGNCTTGTTCTTGTTCT
TCTTGTTCCTGTTCTTGTTCCTGTTCTTGTTCTTGCTCGTCTTGTTGTTG
TTGTTGTTGTTNGTGNTGTTGTTTTTTTTNNNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTCCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTCTTTTTTTTT
TTCTTCTCTTTTTTTCTTTTTTTCTCTTTTTCTCTTTTCTTTTTTTTTTT
TCTTTTTTTTTCTCTTTTTTCTCCTTCTCTCTTTCTTTTTTTTTTCCCTT
TTCCTCTTANTCTCCCTTCTTCTTTCTCTTTTCCTTTCTTTTTCTTCTTT
TCTT
NNTTATGATGGGGATGGGGCGCTGGCGTCGAATTTGGTGAACTATAGAAG
GATTGNGGCCATTTAGGCCCCCNNGNNNNNNNNNNNNNNNNNGGNNNGCT
TTAAAAGNNGGNGNNNNNNNNNNAGGGANGANGNNNNNGAGANNNNGNNN
GGAGNAGAGANNGAAGGAATTTTTAGGGGGAGAGNGNNNNANNNGAGGAN
NNANNNNANAAANAANNANNANANNNAGAAANNANGGNAGAAGNNAANAA
GAGNNGGNNGANAGGANANAGNNANNNNGGGAGGGGNNANGNNAGNGNNN
GGAAAANANAGAAGGGTTTTNNNANAANNANNNANNGGANAGAGNANAAG
GNNNNNAAGGAAGGAGNNAGAGAAAGNANNNAGGGATTTTTTTTTGGNNN
GAAGNNNNANAGGAGGAANANGAAGAGGAAAAAAAGAANNTTTTTTTTTT
CCCCCCCCCCNAAANNNNNNNNNNNAAAAAAAAAAAAGAGGGGGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNGNNNNN
NNNNNNNNNNGNNNNNGNGNNGGNNNNNNNNNNNNGNNNNGGGNNNNGGN
NGNNNNNGGNNGGGGNGGGGGGGGGNNGNGGNGNNGGNNNNGGGNNGGGG
NNGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGG
GGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGTGTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGNGGGGGGGGGGNGGGGGGGGGTGGTTTTTTTTTTTTTTTGT
TTGGGGGGGGTGTNGTTNGTTGTTTTTTGTTTTTGTTGGNTGGGGGTGTT
TGTGTGTGTGTGGTTTTTTGGTTTGTGTTGTTTTGGTTTTTTTTGTGTTT
GTTTTTTTTTGNGGTTTGTTTGGGTGTTGTGTTTTTGTGTTTGGTTTTGT
TGTTTGTTTGTGTNTGTTGTTTTGGGTTGTTTTTTTTTTTGTGGGTGTTT
TTTTTTTTNTTGTTTTTGTGNTTTGTGTGGTGTTGTTGTTTTGTTTTTTT
GGTTTTTTTGTGTTTGTTGTTTGTTTTTTGTTNTGTTGTTTTTTTTTGTG
TTTTTTGTGGNGTTGTGTTGGTGTTGTTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_i22.b1 MSMg01no192_i22.b1 CHROMAT_FILE:
MSMg01no192_i22.b1 PHD_FILE: MSMg01no192_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:05 2005
         (409 letters)



>mm_chr2_96323612_96324420
          Length = 809

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctgcctcaaatggaaattgtctaccagaaatatgtttatgttgttcttaagg 64
           ||||||||||||  ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 609 gaattcagctgcaacaaatggaaattgcctaccagaaatatgttcatgttgttcttaagg 550

                                                                       
Query: 65  gtcaagtctgacaacagggataactatgcacaagattcagtactgccttcaggcttggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtcaagtctgacaacagggataactatgcacaagattcagtactgccttcaggcttggag 490

                                                                       
Query: 125 ggagtatctgcccttctgcctattcatttttactctgttgaatttcatcgtcctcacctc 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggaatatctgcccttctgcctattcatttttactctgttgaatttcatcgtcctcacctc 430

                                                                       
Query: 185 ctcaaatcttgaataacatggtgctagatctccagtcttcaagttctaagtacttacgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctcaaatcttgaataacatggtgctagatctccagtcttcaagttctaagtacttacgga 370

                                                                       
Query: 245 gttaagagggaaagagcatgattctcctcacacagcttttgttataacctcaatgttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttaagagggaaagagcatgattctcctcacacagcttttgttataacctcaatgttgtt 310

                                                                       
Query: 305 gctttcaagggacttgcatatcaaaatggtcagaaactatcatgtaagcatggtatacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 309 gctttcaagggacttgcatatcaaaatggtcagaaactatcatgtaagcatggtagacag 250

                                                        
Query: 365 gcaaagcaaggaagtgtcttttaaaaaaagaaggataagaaaaaa 409
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcaaagcaaggaagtgtcttttaaaaaaagaaggataagaaaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)