BAC Information

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BAC

Clone NameMSMg01-193B10
Chromosome2 (Build37)
Map Location 134,024,778 - 134,025,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043785, A430048G15Rik, Bmp2
Downstream geneHao1, Txndc13, LOC627897, LOC433478, Plcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193B10.T7 (MSMg01no193_b10.b1)MSMg01-193B10.TJ (MSMg01no193_b10.g1)
ACCAG382538AG382539
length819758
length of high quality
(start - end)
376 (46 - 421)592 (77 - 668)
definitionCHROMAT_FILE: MSMg01no193_b10.b1 PHD_FILE: MSMg01no193_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:19 2005CHROMAT_FILE: MSMg01no193_b10.g1 PHD_FILE: MSMg01no193_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGATAATTCTCTACCCCATTTTTAATACAGTTATTTGATTCTC
TGGAGTATAACATCTTGATTTATTTGTATATATTGGATATTAACCCTCTA
TAGATGTAGGATTGGTTAAGATATTTCCCCAATTTGTGGGTTGCCATTTT
GTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTGTGCAATTTTAGAGG
TCTCATTTGTCTATTTTTGATCTTACAGCACAAGCTGTTGATATTCTGTT
CAAGAAATTTTCCCCTATGCCTATGTGCTCGAGACTCTTTCTCTCTTTCT
TTTCTGTAAGTTTCAGTGTATCTGGTTTTATGTAGAGGTCCATGATGCAC
TTGGACTTGAGTTTTGTACCACCATATAAGATTGGATTGTTTTTTACTTT
CACTACATGTTGTTTTCTCTTTTTTATCTTTCCCTTCCGCTTAAATTCGC
TGACCCTTTCTTCTTTTGTCCTTGTCTTTACCTTCCCTATCCTTCCTCAT
TCCCCTTTTTTTTTTCTTTTATTCCCACTTTTTTATTTATCATCCCTACT
ACACTTCTTTATTATTTTTACATCTTTCTCCCCTTATTCTATTATTTTTT
TTTTTTTCTTTTTTTTCACCTTTTCCTTTTCTTTTCTCCTCCCTTCCTTC
TTCTCCTTGCCCCTTTGACTTCTTCTTCTCTCCTTTTTCCCTTCTCCTCC
CCCTTATTTTTTCTCCCCCTCCTCTTCCTCTTCTTTATTTACTTCCTTTC
CCCTTATTCTCCTCCCCGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACCTTTCAACATAGGATACAAAT
CTTAGAAAATAGATTTCTTTGATAAATTCTTTCCAGAGATTTTTGTCATT
TTTATGTATTTTTTCCTAATCAAGATTGGTTTGTTTTAAGCCATTTTGTT
TCCTCTATATTAAAAAAAAAGTAAAGCCTTCTTTATTTTTCTGTGGCTAT
ACTATACGATGCATGGAAAGTTTTTGCTTATGGAAAAAATTCTGATTGAC
AACCAGTTATGAGATGGGTGAAATAAAGGACTTGCACACTGTTTTTCCAT
ATAACGATATTAAATGTCTTTTGATAATCACTTTGCCAACTCACAATCAT
CTGTGGTATGTGATGATTTCTGTATCTGCAGATAATTTCTGGCAAAATAC
AAGGCAGAAATTAAAGACTTCCGGTGAAGTGAGGAGTTTCTCCACACTTA
TTGTCTGTGTCTACTTACTCTTTTATAAAGCACATCAAAATATTTTGCGT
ACCTTATTTTTAATTATTATTACTTGGGAAGAGTTTTAGATTCCAATCCA
TGGCCTTGAGAATGCTAAACAAGCTTTCTATTGTGGAGATAGAGACCTCT
AGTCTCATTTTGCTTGTTCTGTTATTGAACACTCAATGCAGATCCTCAAC
CAAACCAATTAGGCATGGTGACTTTATCAGAAAGTTGGGATTACCTAAGT
TTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_b10.g1 MSMg01no193_b10.g1 CHROMAT_FILE:
MSMg01no193_b10.g1 PHD_FILE: MSMg01no193_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:19 2005
         (592 letters)



>mm_chr2_134024578_134025569
          Length = 992

 Score = 1077 bits (557), Expect = 0.0
 Identities = 584/593 (98%), Gaps = 2/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctttcaacataggatacaaatcttagaaaatagatttctttgataaattctttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctttcaacataggatacaaatcttagaaaatagatttctttgataaattctttccag 260

                                                                       
Query: 61  agatttttgtcatttttatgtattttttcctaatcaagattggtttgttttaagccattt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 agatttttgtcatttttatgtattttttcctaatcaagactggtttgttttaagccattt 320

                                                                       
Query: 121 tgtttcctctatattaaaaaaaaagtaaagccttctttatttttctgtggctatactata 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttcctctatatt-aaaaaaaagtaaagccttctttatttttctgtggctatactata 379

                                                                       
Query: 181 cgatgcatggaaagtttttgcttatgg-aaaaaattctgattgacaaccagttatgagat 239
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 380 cgatgcatggaaagtttttgcttatggaaaaaaattctgtttgacaaccagttatgagat 439

                                                                       
Query: 240 gggtgaaataaaggacttgcacactgtttttccatataacgatattaaatgtcttttgat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggtgaaataaaggacttgcacactgtttttccatataacgatattaaatgtcttttgat 499

                                                                       
Query: 300 aatcactttgccaactcacaatcatctgtggtatgtgatgatttctgtatctgcagataa 359
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 aatcactttgccaactcataatcatcagtggtatgtgatgatttctgtatctgcagataa 559

                                                                       
Query: 360 tttctggcaaaatacaaggcagaaattaaagacttccggtgaagtgaggagtttctccac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctggcaaaatacaaggcagaaattaaagacttccggtgaagtgaggagtttctccac 619

                                                                       
Query: 420 acttattgtctgtgtctacttactcttttataaagcacatcaaaatattttgcgtacctt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 620 acttattgtctgtgtctacttactcttttataaagcacatcaaaatattttgcttatctt 679

                                                                       
Query: 480 atttttaattattattacttgggaagagttttagattccaatccatggccttgagaatgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttttaattattattacttgggaagagttttagattccaatccatggccttgagaatgc 739

                                                                
Query: 540 taaacaagctttctattgtggagatagagacctctagtctcattttgcttgtt 592
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 taaacaagctttctattgtggagatatagacctctagtctcattttgcttgtt 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)