BAC Information

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BAC

Clone NameMSMg01-193E12
Chromosome2 (Build37)
Map Location 114,300,365 - 114,300,475
singlet/doubletsinglet
Overlap genenone
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneAtpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193E12.T7 (MSMg01no193_e12.b1)MSMg01-193E12.TJ (MSMg01no193_e12.g1)
ACCAG382651
length722721
length of high quality
(start - end)
---111 (126 - 236)
definitionCHROMAT_FILE: MSMg01no193_e12.b1 PHD_FILE: MSMg01no193_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:37 2005CHROMAT_FILE: MSMg01no193_e12.g1 PHD_FILE: MSMg01no193_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCTTAGTAACTGCATTCTCGAGTCATATTTAAACACTTATAG
AATTCCCTGCCATAGATTAACGATGGTTGTCCAAGCTTATTGGTAATTAA
AGCTATTATAATTAATATCTAACATAATAATTTCATTAAGACTTGATTTA
CTAATAATATCAATAAAATCAATACTACTTTAAGGGTCAATGCATTGTCT
GATATGTCTTACAGTGTTTTTTCTTTTCCCTCTTTTATATTATTTGATAA
ATTATTGTTTCATTTGTCTTTTAAAGGTAATATTTTCCACATTTTTTTTA
TTCCCCCCCCTCCCCTTGGATTGATGATATGAAAACATATAATCCTCCCC
CCCCCCTCTTAAAATCTTTTTGGGTTTTTCGCTGCTCATCCCCCACCACT
ATTTTATCCCTATTCCTCCACATTTCTCCTTCTTTTCGCTTAACCTTTAC
CCGCCCCCTATCTTCTTGTCCTGTTTCCTTTTAACTCTCCCTTATCCATA
CATTCTTAATTCGCTACGATATCATTCTTTCTCTTTCCTATTCTTCCACA
CATTCTCCCTTTGTCTCTTTTTATTTCTCTTCCACCACTTTCCTCCCCGT
TCATTTTTTTTTTTCTCCTTTTTTCTCCCTTTTCCCTCCTCCTTTTCTTT
CCCACTTTTTTTTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_e12.g1 MSMg01no193_e12.g1 CHROMAT_FILE:
MSMg01no193_e12.g1 PHD_FILE: MSMg01no193_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:37 2005
         (111 letters)



>mm_chr2_114300165_114300675
          Length = 511

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgtccaagcttattggtaattaaagctattataattaatatctaacataataatttca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gttggccaagcttattggtaattaaagctattataattaatatctaacataataatttca 252

                                                              
Query: 61  ttaagacttgatttactaataatatcaataaaatcaatactactttaaggg 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttaagacttgatttactaataatatcaataaaatcaatactactttaaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)