BAC Information

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BAC

Clone NameMSMg01-193J04
Chromosome2 (Build37)
Map Location 46,962,456 - 46,962,748
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193J04.T7 (MSMg01no193_j04.b1)MSMg01-193J04.TJ (MSMg01no193_j04.g1)
ACCAG382821AG382822
length765778
length of high quality
(start - end)
585 (44 - 628)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no193_j04.b1 PHD_FILE: MSMg01no193_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:05 2005CHROMAT_FILE: MSMg01no193_j04.g1 PHD_FILE: MSMg01no193_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTTGTTCAGTTCTCAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAATATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTCTAGGTCTGGTATGGTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAGACTTTTTGCTATCCCAAGTTTTTTTGTTATTTCCGACAT
ATTTGGCACCCGCCN
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATATTAATCTTCTGCATTAT
GCATACAAAGGAGATCTGATTTAATGTTCCCAATTAATGACGAGATTGGT
TTAGGCAGTGTGTCAGGTAAAACATTTATTTCAACACAAAGATGGAGGCT
GGGATGGTGGCTCACATGAGTAATTTGAGAGCCACAAACAGTACTTGAGG
ACAAAGAGTGTCTCGTCCTTGTGGTGGAGATATGAGGATAATTGAGACTA
CACAAGTTTTTAACTTGGTTTGGTTTTGCTTCTGACATAAATAAAATACC
TTTGATAAATATATTATACTATATGTATGCACATGCACGTATCTACACTA
TATAGAGATATGGATATAGATATGGATATATAGATATGTAACAGAAGTAC
TTGATTAATTTCCTGGTGTTTGTCTCACCATTCCAATTTCTGTTGGTTTT
TCTTCATCCTATTCCCTTTCACACACTGTTTTTATTAAATTTTCTTTGCA
TTTGATATACTTATATACCACTAAGATTATACTGTGTCTTACAGCTTAAG
CTAATATATTAAAAATTTGCAAACCTAAGTATATTTTTTCAAATGTTGAC
TATATGGGCCCCATGGGTTAAAAAATTCTCCTAACTGTTTCTGGAACCTT
TTATTTCATTTTGTAGACTTTTAATGCTAAATCACCCTCAACTAAATTCT
TAAATTCTTCCTGTCACCTAACCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_j04.g1 MSMg01no193_j04.g1 CHROMAT_FILE:
MSMg01no193_j04.g1 PHD_FILE: MSMg01no193_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:05 2005
         (295 letters)



>mm_chr2_46962254_46962948
          Length = 695

 Score =  536 bits (277), Expect = e-157
 Identities = 289/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaatattaatcttctgcattatgcatacaaaggagatctgatttaatgttcccaattaat 62
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 495 aaatattaatcttctgcattatgcatacaaaggagatctgatttaatgttctgaattaat 436

                                                                       
Query: 63  gacgagattggtttaggcagtgtgtcaggtaaaacatttatttcaacacaaagatggagg 122
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gacgagattggttttggcagtatgtcaggtaaaacatttatttcaacacaaagatggagg 376

                                                                       
Query: 123 ctgggatggtggctcacatgagtaatttgagagccacaaacagtacttgaggacaaagag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgggatggtggctcacatgagtaatttgagagccacaaacagtacttgaggacaaagag 316

                                                                       
Query: 183 tgtctcgtccttgtggtggagatatgaggataattgagactacacaagtttttaacttgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtctcgtccttgtggtggagatatgaggataattgagactacacaagtttttaacttgg 256

                                                                
Query: 243 tttggttttgcttctgacataaataaaatacctttgataaatatattatacta 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttggttttgcttctgacataaataaaatacctttgataaatatattatacta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)