BAC Information

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BAC

Clone NameMSMg01-193J17
Chromosome2 (Build37)
Map Location 98,109,084 - 98,109,397
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc4c, LOC621146, LOC664974
Downstream geneLOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193J17.T7 (MSMg01no193_j17.b1)MSMg01-193J17.TJ (MSMg01no193_j17.g1)
ACCAG382842AG382843
length745771
length of high quality
(start - end)
320 (45 - 364)236 (78 - 313)
definitionCHROMAT_FILE: MSMg01no193_j17.b1 PHD_FILE: MSMg01no193_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:07 2005CHROMAT_FILE: MSMg01no193_j17.g1 PHD_FILE: MSMg01no193_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAATCCGCGG
AATTCTTTAGTTGTCTCCTTTGACATGGACGTTTTGAAATATTTGACTGA
CTCTCAAATTGAAATCTTAATTCATTCATTCATTGACTTGCCTATTTATT
ATTTCTGTTAAATTATTTTTCCATCATTGTTGATGATCCCAGGGCTGTGC
AAATCCTATGTGCCGTTGTTTAGCTACAAGACTCAGGCTTGCAAATAAGA
AATGTTTTTATCGCTTTATGTCAACTTGACTTCTCAGCAGAAAATTTAAA
GGCATTTAACATTAATAGTCATATTTTTTCTTTGATGTTTTCGAAAAATT
GACAGAGTTCCTAACTANGTTGCCCCCCCCCGCCCCAAATCACTGTATAG
TTCAGTTGAGTCTTGGCCCCCCGACTTTCAAAGAAAAACTTCCTATATGT
TAGGGATTATATGAATGTGACACTAGGTATATCCCTAAAATCTACTGTAC
AGGAGGCATTATCGTGGTTTTGTATACCACCACACAACATTTTCTCATCC
GCATGCTTATTACTTTCGCCAGCACTTCCCTCATTTTATACCCATGCCCC
ACCATCATTTCATATCTGATCTACATACAGACAACTTACCCCCCTGACCT
ATGCAACCTTTCGTTTCCTATTTGCCTTCATCCCCCCAAAATTTTGTTTT
TCATTTCGTTTTTCCCCTATTCCCCCATTTTCCCCTTACTCTTCC
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAACAACAAATAGGAATGGA
TTCAGAGTTGCTAGAGCCAAGCATTAATTAGAGTTTTGGGAGAAAGGATT
GGAGGAGGGTTAGAAAAGACAGGAGGAATCAGAGGTGTCAGGAATATATC
ACAAGAATATAGCCATACAACCTACCTATGGGGACTCAGGGGGACTTGGA
GAGATCAGAGAACGTGTAAGGGTGAGACCTAGGTTCTCTGCATATATGTT
GTGACTACGAACTTTGGAGTCCTTTTTGTTTTCCTCACCTTACGAACACG
CTCTATGCCCGACTCTTTTTTTTTCCCCCGGGCCCCCCCCCCTCCTATAG
TGGTATGAGTTCTTTCTTCCCCCCCCCCTTCGAACAAAAAACCTGTGGTG
GGCCCCGCCCGGCATTCCTGTCCCCCGCCCCGCCCCATTTACCCTTTTTA
CCCCCACCGCCCGCTTCTTTTCTCTCCATCCCTCTCACTTTCCCGTACCT
GTTTCCCTTCCCCTTTCCCTCCCCCCATTTCCCCCTTCCCCCCCCCTCTT
CTTCTTCCCCCCCTTCTCTTCCCACCTCCCTCCTTCCCCCCCCTCCCCTT
CTCCCCCCCCCTATCTCCCCTCCTTTTTCTCCCTTTTTCCCCCCCTTCCC
CTCATCTTCCTCCTTTTCCTTTCTCCCCCCCCTCTTCACTCCCCCTCCCT
TCCCCTTTCTCTCTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_j17.b1 MSMg01no193_j17.b1 CHROMAT_FILE:
MSMg01no193_j17.b1 PHD_FILE: MSMg01no193_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:07 2005
         (320 letters)



>mm_chr2_98108879_98109598
          Length = 720

 Score =  530 bits (274), Expect = e-155
 Identities = 304/314 (96%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttagttgtctcctttgacatggacgttttgaaatatttgactgactctcaaat 65
           ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 206 gaattctttagttgtcttctttgacatagacgttttgaaatatttgactgactcacaaat 265

                                                                       
Query: 66  tgaaatcttaattcattcattcattgacttgcctatttattatttctgttaaattatttt 125
           ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 266 tgaaatcttcattcattcattcattgatttgcctatttattatttcttttaaattatttt 325

                                                                       
Query: 126 tccatcattgttgatgatcccagggctgtgcaaatcctatgtgccgttgtttagctacaa 185
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccatcattgttgatgatcccagggctgtgcaaatcctatgtgccgttgtttagctacaa 385

                                                                       
Query: 186 gactcaggcttgcaaataagaaatgtttttatcgctttatgtcaacttgacttctcagca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gactcaggcttgcaaataagaaatgtttttatcgctttatgtcaacttgacttctcagca 445

                                                                       
Query: 246 gaaaatttaaaggcatttaacattaatagtcatattttttctttgatgttttcgaaaaat 305
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 446 gaaaatttaaaggcatttaacattaatagtcataggctttctttgatgttttcgaaaaat 505

                         
Query: 306 tgacagagttccta 319
           ||||||||||||||
Sbjct: 506 tgacagagttccta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)