BAC Information

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BAC

Clone NameMSMg01-194D03
Chromosome2 (Build37)
Map Location 171,127,729 - 171,128,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194D03.T7 (MSMg01no194_d03.b1)MSMg01-194D03.TJ (MSMg01no194_d03.g1)
ACCAG383209AG383210
length726726
length of high quality
(start - end)
679 (46 - 724)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no194_d03.b1 PHD_FILE: MSMg01no194_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:00 2005CHROMAT_FILE: MSMg01no194_d03.g1 PHD_FILE: MSMg01no194_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGTCTAGCACTATACTCTATTTTTTGACTGGGTTGTTTAGTTT
TTTGGTGATTATCTTCTTGAGTTCTTTATATATTTTGCCTATTAGCCCTC
TGATGATGTGGGGTTGGTGAAGATTTTTTCCCAATCTATAGGTTGCCAAT
TTGTCTTATTGACTATGACCTTTGCCTTTCAGAAGCTCTCTGGTTTTATG
AGGTTCCCTTTATCAGTTCTTGATCTTAGAACATGAGCCATTGGAGTTCT
GTTTAGGAAATTTCCTCCTGTGCCAATGGGTTCAAGACTTTTTCCCACTT
TCTCTTCTATTAGATTCAGTGTATCTGAATTTATGTTGAGGTCCTTGATC
AACTTGGACTTGAGCTTAGTACAAGGTAACAAATATGGGTCTATTTTCAT
TCTTCTACATACAGACAGCCAGTTAGACCAGCACCATTTATTTTTTCCAT
TGTATATTTTTGGTGCCTTTTTCAAAAAACAAGTGATGGTAGATGTGTAG
TTTTATTTCTGGCTCTTCAATTCTCTTCCATTGATCAACATGTCTGTCTC
TGTACCAATACCATGCAGGGTTTTTATTAATTAATTAATTAATTAATTAA
GTAATTAATTAATTAAAATCACTATTGCTCTTTAGTAAACCTTGAGGTCA
GGGATGGTAATTCCCCTAGCTGTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTTAGAGATATACCTGGATCCCA
GACAGAGCAGCCAGACATGTCACCAACAGGTGGCAGAAGTTGTAGCTGAT
TGCTTCTTGGTGGGAGTCTCTTTGTCTTACTGGCAATCCTTGAGACAAGC
CTTAGAACTTGAAAATAAATCTGTGTCAACTATTTTGTTAATAGCCACTA
ATAATTCCACAAGGTCCAGGAAGCCTTCATGCATCTGCTGATGGGAACAG
AGGCAGAGACCACCAGCCAACCCAAGACCTGGGCAGATAGAGCCCAAATT
AGAGACCTCGATTTGTTCCCTCCCGCCCGCACCTGGGGAAACACCGAGGA
GGAGGAGGAAGAATCCTAGGAGCCAGAGAAATTGGGAACACAAGGGAAAC
CTGTCCAAGGAATCAACTAAGCAGAGTTTATGGCACTCAGAGACTGAAGC
AGCAATCACAGAGCCTGCATGCGTCTGTACTGCGTCCCCCATATACATGC
TGCGGTTGGTTGTTAGCTTGGTGGCTTTGTGTGACTCCTAATAGTAGAAA
CAGGATATCTGTAACTCTTTCACCTGCTCTTGGGCCCTTTCTTCTCCTAC
TGGATTTGTGCCGAGTCTTATTGCTTGACATTATACCATGTTCGGGTGAC
ACACTTGGGTGGCCTGTACTTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_d03.g1 MSMg01no194_d03.g1 CHROMAT_FILE:
MSMg01no194_d03.g1 PHD_FILE: MSMg01no194_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:00 2005
         (288 letters)



>mm_chr2_171127529_171128216
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttagagatatacctggatcccagacagagcagccagacatgtcaccaacaggtggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctgttagagatatacctggatcccagacagagcagccagacatgtcaccaacaggtggca 428

                                                                       
Query: 61  gaagttgtagctgattgcttcttggtgggagtctctttgtcttactggcaatccttgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaagttgtagctgattgcttcttggtgggagtctctttgtcttactggcaatccttgaga 368

                                                                       
Query: 121 caagccttagaacttgaaaataaatctgtgtcaactattttgttaatagccactaataat 180
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 367 caagccttaggacttgaaaataaatctgtgtcaactattttgtcaatagccactaataat 308

                                                                       
Query: 181 tccacaaggtccaggaagccttcatgcatctgctgatgggaacagaggcagagaccacca 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 307 tccacaaggtccaggaagccttcatgcagctgctgatgggaacagaggcagagaccacca 248

                                                          
Query: 241 gccaacccaagacctgggcagatagagcccaaattagagacctcgat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccaacccaagacctgggcagatagagcccaaattagagacctcgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)