Query= MSMg01no194_f18.b1 MSMg01no194_f18.b1 CHROMAT_FILE:
MSMg01no194_f18.b1 PHD_FILE: MSMg01no194_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:12 2005
(575 letters)
>mm_chr2_181287649_181288624
Length = 976
Score = 1044 bits (540), Expect = 0.0
Identities = 564/572 (98%), Gaps = 2/572 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaccactaccgggccagacactgtgagggctccagaaacccttggcttagacta 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gaattcaaccactaaggggccagacactgtgagggctccagaaacccttggcttagacta 915
Query: 65 tttaacaggtctcgcccatgtcccacctcccccaaggtccatgtagcctaggctgtcctg 124
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tttaacaggtct-gtccatgtcccacctcccccaaggtccatgtagcctaggctgtcctg 856
Query: 125 gaacttgctatgtagactagcagaccaggctggccttcatgtcacagaaatccacttgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaacttgctatgtagactagcagaccaggctggccttcatgtcacagaaatccacttgcc 796
Query: 185 ttagcaggaattaaagatgcaagggactaacaggtgctttccatcattctagtcatgaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttagcaggaattaaagatgcaagggactaacaggtgctttccatcattctagtcatgaga 736
Query: 245 ttcagaaatgaggtatcagaactgagagggaggtgtgctcacagctggaccaggaaatga 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 735 ttcagaaatgaggtatcagaactgagagggaggggtgctcacagctggaccaggaaatga 676
Query: 305 gggtcagcccaaaagggacccagcaacaggggtcaacatcaggtgccatttcagtgccaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gggtcagcccaaaagggacccagcaacaggggtcaacatcaggtgccatttcagtgccaa 616
Query: 365 attcacaaataatatttggcaggaaatcactaataagacacttatctggtctacagtgaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 attcacaaataatatttggcaggaaatcactaataagacacttatctggtctacagtgaa 556
Query: 425 aacatttattatacaacagctatctttattttaggtcaacatttagacagctcaccatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacatttattatacaacagctatctttattttaggtcaacatttagacagctcaccatgt 496
Query: 485 gg-accaccacagctttcagcttggcccttggaggaacatcagtcagcctgaactgacag 543
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 ggaaccaccacagctttcagcttggctcttggaggaacatcagtcagcctgaactgacag 436
Query: 544 caacttgtaccctgctgtaaaccagtctgtag 575
|||||||||||||| |||||||||||||||||
Sbjct: 435 caacttgtaccctgatgtaaaccagtctgtag 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_f18.g1 MSMg01no194_f18.g1 CHROMAT_FILE:
MSMg01no194_f18.g1 PHD_FILE: MSMg01no194_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:12 2005
(283 letters)
>mm_chr2_181133790_181134472
Length = 683
Score = 460 bits (238), Expect = e-134
Identities = 274/290 (94%), Gaps = 7/290 (2%)
Strand = Plus / Plus
Query: 1 taagccaaaataagcccttctttccctaagttgcttgtcaggcatttga-------tcac 53
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct: 194 taagccaaaataagcccttctttgcctaagttgcttgtcaggcatttgacagcatttgac 253
Query: 54 agtaatgagaaaagtaatattcccactcctacgcttctctgtgggactccacacctaggt 113
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 254 agcaatgagaaaagtaatatgcccactcctacgcttctctgtgggaccccacacctaggt 313
Query: 114 ccactgctgcctgccctacatccctagggcaggtgccagagaaccagttgtgccttggtg 173
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 314 ccacggctgcctgccctacatccctagggcaggtgccagagaaccagttgtgccttggcg 373
Query: 174 tggtgagacatgcctcctatatctgggggtcagagagtataataattttcttcctttagg 233
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tggtgacacatgcctcctatatctgggggtcagagagtataataattttcttcctttagg 433
Query: 234 gcagtcacttctatgtccgtgacttgccacactcgattaaaactcaaatg 283
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 434 gcagtcacttctatgtccgtgacttgcaacactcgattaaaactcaaatg 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
