BAC Information

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BAC

Clone NameMSMg01-195E21
Chromosome2 (Build37)
Map Location 168,581,882 - 168,582,169
singlet/doubletsinglet
Overlap geneSall4
Upstream geneLOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a
Downstream geneZfp64, LOC100043909, EG668954, Tshz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195E21.T7 (MSMg01no195_e21.b1)MSMg01-195E21.TJ (MSMg01no195_e21.g1)
ACCAG383883AG383884
length725730
length of high quality
(start - end)
317 (46 - 362)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no195_e21.b1 PHD_FILE: MSMg01no195_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:29 2005CHROMAT_FILE: MSMg01no195_e21.g1 PHD_FILE: MSMg01no195_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCATTCATTCAATCATTCATTCATTCATTCAGGTTTTTGAAAC
AAGGCCTATGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCT
GGCTTCAAACTCATAGAGATCCACCTGTCTCTGTCTCCTAAATGCTGTGA
TTAAAAGTGTGTGCTACCACCGCCTGGCTTTGAGATTTTTTTTTTCTTAA
TTAAGTCATTTGAAATGGGAAGACTCACTTCTAATCTGGGCCTTCTGAGG
TGGGAAGATCCTCCTTTAATCTAGGTCACACCTTCTGCTGGCAGCCAATA
GAAAGGACATGTATTATTCTTCCCTGCCCTNCCTGCCTGCTTGCCTTTGC
TCTGGATAGCAAAGTTCATTCCTTCCTGAAATAAAGCCTACAACTTCAGG
ATTCCAGTATCTACTGAAGACCAGCTGAGATCCACAGCCTTGTGGACGGA
ACAATCACTGCGTTCCTGGACCTTCGGCGGGTAGACAGCCAGTTGGACTA
AATGGTCAGCAGGGAGCCTGCAAGCCATTCTAATTAATCCCCCTCATATA
TAAATGTCTCCAGTTCGGCTCCTGGAGAACCCTGACTCCTATGTACAGCC
TGAAGGAAGCACACTGGTGACCGGATCCGACAGGAGCCCCGTGGCTGCGC
TACAGTCTCATCTGATGTCTGAGAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGAACACAAGAAAAGTTGCACT
AAAACCCCTCCTGTCCTCATCATGAATGACAGCGAGGGGCCAGTGCCTTC
AGAGGACTTTTCCAGAGCTGCCCTGAGCCACCAGCTGGGCAGCCCAAGCA
ATAAAGACAGTCTCCAGGAGAACGGCAGCAGCTCGGGGGACTTGAAGAAG
CTGGGCACGGACTCCATCCTGTACTTGAAGACAGAGGCTACCCAGCCATC
CACACCCCAGGACATAAGCTATTTACCCAAAGGCAAAGTAGCCAACACCA
ATGTGACTCTGCAGTTTCTCCTCTGCNAAACCGGCCCCGTGAACCAACGG
GGTGCAGAGGCACCCATGGCGCCCATGCAAAAAAAAAAAGGCATCCCTTG
GGTCCTGGAGCAAATCCTGTGCCTGCAGCAGCAGCAACTCCAGCAGATAC
AGCTTACGGAACAGATCCGCGTCCAGGTGAACATGTGGGCAGCGCACGCA
CTCCACTCTGGAGTGTCGGGGGCCGACACGCTGAAGGCCTTAAGCAGCCA
CGTGTCTCAGCAAGTGTCCGTGTCCCAGCAGGTGTCGGCTGCCGTGGCCC
TGCTCAGCCAGAAAGCCTCAAACCCAGCTCTGTCGCTCGATGCTTTGAAA
CAAGCCAAGCTACCTCATGTCAGCGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_e21.g1 MSMg01no195_e21.g1 CHROMAT_FILE:
MSMg01no195_e21.g1 PHD_FILE: MSMg01no195_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:29 2005
         (288 letters)



>mm_chr2_168581682_168582369
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaacacaagaaaagttgcactaaaacccctcctgtcctcatcatgaatgacagcgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atggaacacaagaaaagttgcactaaaacccctcctgtcctcatcatgaatgacagcgag 429

                                                                       
Query: 61  gggccagtgccttcagaggacttttccagagctgccctgagccaccagctgggcagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gggccagtgccttcagaggacttttccagagctgccctgagccaccagctgggcagccca 369

                                                                       
Query: 121 agcaataaagacagtctccaggagaacggcagcagctcgggggacttgaagaagctgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcaataaagacagtctccaggagaacggcagcagctcgggggacttgaagaagctgggc 309

                                                                       
Query: 181 acggactccatcctgtacttgaagacagaggctacccagccatccacaccccaggacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acggactccatcctgtacttgaagacagaggctacccagccatccacaccccaggacata 249

                                                           
Query: 241 agctatttacccaaaggcaaagtagccaacaccaatgtgactctgcag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agctatttacccaaaggcaaagtagccaacaccaatgtgactctgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)