Query= MSMg01no195_l03.b1 MSMg01no195_l03.b1 CHROMAT_FILE:
MSMg01no195_l03.b1 PHD_FILE: MSMg01no195_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:59 2005
(509 letters)
>mm_chr2_4610032_4610940
Length = 909
Score = 876 bits (453), Expect = 0.0
Identities = 474/483 (98%), Gaps = 6/483 (1%)
Strand = Plus / Minus
Query: 4 gaattccttagc---tttctttaaggaagaagtaataccattatcctaataccaatacca 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaattccttagcaaa--tatttaaggaagaagtaataccattatcctaataccaatacca 436
Query: 61 aaggaagtatatttttaaaaatcactatccttataaagtaagcgtaaaaaattattagca 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 aaggaagtatatttttaaaaatcactatccttataaagtaagcataaaaaattattagca 376
Query: 121 agtgtcaaatgttgtgtggatcattacagatgaggtgtctcctagaaatgcaattgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtgtcaaatgttgtgtggatcattacagatgaggtgtctcctagaaatgcaattgtaaa 316
Query: 181 atcaatgtaagcatattaatttgaaaaacacaatcatatcaaaagatatatataatcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atcaatgtaagcatattaatttgaaaaacacaatcatatcaaaagatatatataatcttg 256
Query: 241 agaaagtttcaagattaaaaaaatcttaatagaatctgaagctatggcttaaggttcttg 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agaaagtttcaagatt-aaaaaatcttaatagaatctgaagctatggcttaaggttcttg 197
Query: 301 cagaggactcaggttcaggtcccagcacccacatagtggttcacagccatctgtaactcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cagaggactcaggttcaggtcccagcacccacatagtggttcacagccatctgtaactcc 137
Query: 361 aatgtgactggatttgatgccctgttctgactgccatgagcaccaggcatgcatgttgta 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 136 aatgtgactggatttgatgccctgttctgactgccttgagcaccaggcatgcatgttgta 77
Query: 421 catacatatatgctggcaaatcactcagtctttgtgtgtatgtatgtatgtatgtatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 catacatatatgctggcaaatcactcagtctttgtgtgtatgtatgtatgtatgtatgta 17
Query: 481 tgt 483
|||
Sbjct: 16 tgt 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_l03.g1 MSMg01no195_l03.g1 CHROMAT_FILE:
MSMg01no195_l03.g1 PHD_FILE: MSMg01no195_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:59 2005
(656 letters)
>mm_chr2_4469796_4470851
Length = 1056
Score = 1042 bits (539), Expect = 0.0
Identities = 622/687 (90%), Gaps = 58/687 (8%)
Strand = Plus / Plus
Query: 1 caggattctggggttatagacatccctcgttctttgggggatcacactgagtagaaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caggattctggggttatagacatccctcgttctttgggggatcacactgagtagaaatag 256
Query: 61 gaagctgagttcttgaccactctttcctcttggtctggctgtgactgccccttccgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaagctgagttcttgaccactctttcctcttggtctggctgtgactgccccttccgcatg 316
Query: 121 ccatgtgcagttgagggagggtggtcctgtgtatacacatatgtgcgtatgtcctgtgta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccatgtgcagttgagggagggtggtcctgtgtatacacatatgtgcgtatg--------- 367
Query: 181 tacacatatgtgcgtatggtgcatgtgcatgtggaagtcaacattgaatgttgttccccg 240
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ------------------gtgcatgtgcatgtggaagtcaacattgaatgttgttccccg 409
Query: 241 ggtgccttccatcttgttttttgaaaacattggaccggggctcacaggttcagctaggtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 410 ggtgccttccatcttgttttttgaaaacattggaccggggctcacaggttcagctaggct 469
Query: 301 gactgaccagcacatcccagagccttctcgactctaggatggtacttccgtgccaacatg 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 470 gactgaccagcacatcccagagccttcccgactctaggatggtacttccgtgccaacatg 529
Query: 361 cataggttccgaggctcaaattcaggtctccatccttccacaccaagcactttcctggct 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 cataggttccgaggctcaaattcaggtctccatccttccacaccaaacactttcctggct 589
Query: 421 gagttaccttcctaaccctggaagtgcacctttaatgaagcaccggccttaatcggtgtt 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 590 gagttaccttcctaaccctggaagtgcacctttaatgaagcacccgccttaatcggtgtt 649
Query: 481 ccctactttgtggaagccgcctgagttggagctctagtgcacgtggtggtcacatgcc-- 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccctactttgtggaagccgcctgagttggagctctagtgcacgtggtggtcacatgccat 709
Query: 539 -----------------------------gtcttgcggccttgcgctgtggtcacatgcc 569
|||||||| ||||||||||||||||||||||
Sbjct: 710 cttgcgaccttgcactgtggtcacatgccgtcttgcgaccttgcgctgtggtcacatgcc 769
Query: 570 gtcttgcgaccttgcacgtctctgaactgggtttgccgtgactctttcctccagtccttt 629
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 770 gtcttgcgaccttgcacgtctctgaactgggtttgccgtgactccttcctccagttcttt 829
Query: 630 ctctactcacatactcagcctacagtt 656
|||||||||||||||||||||||||||
Sbjct: 830 ctctactcacatactcagcctacagtt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
