Query= MSMg01no196_g19.b1 MSMg01no196_g19.b1 CHROMAT_FILE:
MSMg01no196_g19.b1 PHD_FILE: MSMg01no196_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:58 2005
(554 letters)
>mm_chr2_56919907_56920864
Length = 958
Score = 994 bits (514), Expect = 0.0
Identities = 544/556 (97%), Gaps = 8/556 (1%)
Strand = Plus / Minus
Query: 5 gaattcatccctgcaggagaggggcatttataagcaatatattaattcatgagcagagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattcatccctgcaggagaggggcatttataagcaatatattaattcatgagcagagac 699
Query: 65 atgccagctattgttcagcacggaacataatgaaaatcctggaattgcttctatcgccat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtgccagctattgttcagcacggaacataatgaaaatcctggaattgcttctatcgccat 639
Query: 125 cgttataagggagagagggactaattctttctagcaagtttaataataattaggtaattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cgttataagggagagagggactaattctttctagcaagtttaataataattaggtaattg 579
Query: 185 aatcaccgactcacagctttcccccactttggtatcaaatagtct-aagcttccccggaa 243
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 578 aatcaccgactcacagctttcccccactttggtatcaaatagt-tgaagcttccccggaa 520
Query: 244 ctccaggatgaggcattccttaggaaggagccctaagccttttattataaacctgctgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctccaggatgaggcattccttaggaaggagccctaagccttttattataaacctgctgcc 460
Query: 304 attagctagtgggaattgccatattggctttcccatttcctgtgtgctgctaagtagtag 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 459 attagctagtgggaattgccatgttggctttcccatttcctgtgtgctgctaagtagtag 400
Query: 364 gagacaaatctatgatcacttattaacttataatttagaggagtgattcagacattgatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gagacaaatctatgatcacttattaacttataatttagaggagtgattcagacattgatt 340
Query: 424 ttactattttttattttatgtagcatttgttatttaaaaggtgtttattttttctattgt 483
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttactattttttattttatgtggcatttgttatttaaaaggtgtttattttttctattgt 280
Query: 484 cttcaa----tagat-gcctacccatccctgtagtttagacacatccatgtttgggattt 538
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cttcaaacggcag-tcgcctacccatccctgtagtttagacacatccatgtttgggattt 221
Query: 539 gtaggtggctttatca 554
||||||||||||||||
Sbjct: 220 gtaggtggctttatca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 958
Length adjustment: 10
Effective length of query: 544
Effective length of database: 948
Effective search space: 515712
Effective search space used: 515712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_g19.g1 MSMg01no196_g19.g1 CHROMAT_FILE:
MSMg01no196_g19.g1 PHD_FILE: MSMg01no196_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:58 2005
(539 letters)
>mm_chr2_56867386_56868324
Length = 939
Score = 961 bits (497), Expect = 0.0
Identities = 530/541 (97%), Gaps = 3/541 (0%)
Strand = Plus / Plus
Query: 1 tcatgaataggatcatgccctacagctcagagaatctccttatcccttctaccagatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcatgaataggatcatgccctacagctcagagaatctccttatcccttctaccagatgag 259
Query: 61 aaagaacatcctcagaagatggctgtgtataaaacagaagacaggtcaacactagacaaa 120
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 260 aaagaacatcctcagaagatggctgtgtataaaacaaaagacaggtcagcactagacaaa 319
Query: 121 aaaa-tctaccagtaccctcacctacaatttgagaagtaacaaacaagtttttgttctct 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaaatctaccagtaccctcacctacaatttgagaagtaacaaacaagtttttgttctct 379
Query: 180 aaaagcctctatgccatgctattatagaagggtaaatacacgtga-aaaaatacatatca 238
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 380 aaaagcctctatgccatgctattatagaagggtaaatacacat-acaaaaatacatatca 438
Query: 239 caaaagtatgctttataaaatattaatttataacaaagagactaaaggaggaaaaaggtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaagtatgctttataaaatattaatttataacaaagagactaaaggaggaaaaaggtt 498
Query: 299 atccaggtttggtaggatggataagcaggtaaaactaccaatgggttcagcccttggaac 358
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 499 atccaggtttggtaggatggataagcaggtaaaagtaccaatgggttcagtccttggaac 558
Query: 359 taacatggtagaaagatgtccactgactccacatatgtgagtctgtgtgtgtatgctcat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taacatggtagaaagatgtccactgactccacatatgtgagtctgtgtgtgtatgctcat 618
Query: 419 atataaaaatatatgaaattttatttaatttgtacactacaaaattcaataggatataga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atataaaaatatatgaaattttatttaatttgtacactacaaaattcaataggatataga 678
Query: 479 aagggagacatatcatttttaacttaacaaagatttatattttagcagtgattaactttc 538
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 679 aagggggacgtatcatttttaacttaacaaagatttatattttagtagtgattaactttc 738
Query: 539 t 539
|
Sbjct: 739 t 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
