Query= MSMg01no196_j02.b1 MSMg01no196_j02.b1 CHROMAT_FILE:
MSMg01no196_j02.b1 PHD_FILE: MSMg01no196_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:09 2005
(322 letters)
>mm_chr2_108424866_108425587
Length = 722
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%)
Strand = Plus / Plus
Query: 5 gaattctcatctgtaaggcaaggcagattcaacaaatctcttaggacagcctctggtgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatctgtaaggcaaggcagattcaacaaatctcttaggacagcctctggtgta 264
Query: 65 ggcaaacaatctggcaccaaatgcaaacacccccattcatcccacatttgtgtactgagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ggcaaacaatctggcaccaaatgcaaacacccccattcatcccacatttgtgtgctgagt 324
Query: 125 caaaatgctataggaatataaatttctgcccagctaactccagagtttcttgcatgtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaatgctataggaatataaatttctgcccagctaactccagagtttcttgcatgtttt 384
Query: 185 cagagatcctttagtgaggtgctgtcccaattttccctattctgtactaatgggcagatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagagatcctttagtgaggtgctgtcccaattttccctattctgtactaatgggcagatt 444
Query: 245 gccttacaagtacaaatcattatcaaaatagacctgggatttgacagtgcctttcatcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccttacaagtacaaatcattatcaaaatagacctgggatttgacagtgcctttcatcag 504
Query: 305 caatctcaaatgcacta 321
|||||||||||||||||
Sbjct: 505 caatctcaaatgcacta 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_j02.g1 MSMg01no196_j02.g1 CHROMAT_FILE:
MSMg01no196_j02.g1 PHD_FILE: MSMg01no196_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:09 2005
(623 letters)
>mm_chr2_108481588_108482611
Length = 1024
Score = 1114 bits (576), Expect = 0.0
Identities = 612/624 (98%), Gaps = 1/624 (0%)
Strand = Plus / Minus
Query: 1 tgtaatgtataaagaagttactcatgcaggaagatca-tttttgctcacagtgactctaa 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 824 tgtaatgtataaagaagttactcatgcaggaagatcattttttgctcacagtgactctaa 765
Query: 60 gcaggaatgtgacgcgtgttgttgctgagtgagtcagagaggtagctaacagcttaaggg 119
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 764 gcaggagtgtgacgcgtgttgttgctgagtgagtcagagaggtagctaacagctgaaggg 705
Query: 120 ttaagagcttgtggggcataggtctcagcactccagggtggaggcattgcctctcatgtg 179
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 704 ttaagagcttctggggcataggtctcagcactccagggtagaggcattgccactcatgtg 645
Query: 180 tcaactcatttctttccctaaactctggtttgcagtagcttcatcccttgtcatctgcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcaactcatttctttccctaaactctggtttgcagtagcttcatcccttgtcatctgcag 585
Query: 240 actggcaggtgaagcgtaaagtattctttatactcagtgaacaagatgagttactttctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 actggcaggtgaagcgtaaagtattctttatactcagtgaacaagatgagttactttctc 525
Query: 300 ttttagtaaattgtcttccaaatcctgcttatggattaaaaaaattcttcttctcccttt 359
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 524 ttttagtaaattgtcttcaaaatcctgcttatggattaaaaaaattattcttcccccttt 465
Query: 360 atcctacatatataattaagaacatccctggactcttggtcatcttttttattcccactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atcctacatatataattaagaacatccctggactcttggtcatcttttttattcccactg 405
Query: 420 agaaataatttttgcatgcatttcttaggcaaaacactgcacttagtattaataactgta 479
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 404 agaaataatttttgcatgcatttcttaggtaaaacactgtacttagtattaataactgta 345
Query: 480 gaaataagagcagatgcaaggcaaatgtctggccagttaataccaaagtaaacttagagg 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaaatgagagcagatgcaaggcaaatgtctggccagttaataccaaagtaaacttagagg 285
Query: 540 ctcagcaagcactagaaatctgtaaccattggaacactgcttcagtgatacaaaaaatgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctcagcaagcactagaaatctgtaaccattggaacactgcttcagtgatacaaaaaatgc 225
Query: 600 aaacttggggctttaaaagactct 623
||||||||||||||||||||||||
Sbjct: 224 aaacttggggctttaaaagactct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
