Query= MSMg01no196_k16.b1 MSMg01no196_k16.b1 CHROMAT_FILE:
MSMg01no196_k16.b1 PHD_FILE: MSMg01no196_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:17 2005
(537 letters)
>mm_chr2_115804254_115805193
Length = 940
Score = 984 bits (509), Expect = 0.0
Identities = 529/537 (98%), Gaps = 5/537 (0%)
Strand = Plus / Plus
Query: 5 gaattcccagagggctctgagtagtggtggtgaagtgtcaccaggaaacccgggtgtctg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagagggctttgagtagtggtggtgaagtgtcaccaggaaacccgggtgtctg 264
Query: 65 ggggccgttttttgccactttgcttcaaaagcaactgtgatctgcttcaaagaacctttt 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggccgttttttgtcactttgcttcaaaagcaactgtgatctgcttcaaagaacctttt 324
Query: 125 aaaaccacatgactttgatatgcatgtaagcgtagactctgttacaagaggcaaaaaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaccacatgactttgatatgcatgtaagcgtagactctgttacaagaggcaaaaaacc 384
Query: 185 acaagacctttatctgtacttcaaagtcagcagggaagtgtaggcacaggtaatcttcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaagacctttatctgtacttcaaagtcagcagggaagtgtaggcacaggtaatcttcca 444
Query: 245 attgccaagctaataatgctcaaatcccaagctcggcaaggcctaagtgtagacatagtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attgccaagctaataatgctcaaatcccaagctcggcaaggcctaagtgtagacatagtt 504
Query: 305 cagtctatgtggaaagggaaggaaatggtggctacggtcttgaggggcatcata---tca 361
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 505 cagtctatgtg-aaagggaaggaaatggtggctacagtcttgaggggcatcataatatca 563
Query: 362 ggatgattcagccacgagcgagagatgacagaagaaatgggacaaagcagccaaagagac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggatgattcagccacgagcgagagatgacagaagaaatgggacaaagcagccaaagagac 623
Query: 422 aagaaagaccccaggaggagaaataaaatctgcagatgctgttctggtatctgaccatgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagaaagaccccaggaggagaaataaaatctgcagatgctgttctggtatctgaccatgc 683
Query: 482 catcc-gactgcattgccatctgaactcaattctggaattttcatcttcagacttaa 537
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catcccgactgcattgccatctgaactcaattctggaattttcatcttcagacttaa 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 940
Length adjustment: 10
Effective length of query: 527
Effective length of database: 930
Effective search space: 490110
Effective search space used: 490110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_k16.g1 MSMg01no196_k16.g1 CHROMAT_FILE:
MSMg01no196_k16.g1 PHD_FILE: MSMg01no196_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:17 2005
(287 letters)
>mm_chr2_115868324_115869010
Length = 687
Score = 555 bits (287), Expect = e-162
Identities = 287/287 (100%)
Strand = Plus / Minus
Query: 1 agatggcccacaaatgtgtgtgccatctttgtgtccttatggcccataatcatgaacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agatggcccacaaatgtgtgtgccatctttgtgtccttatggcccataatcatgaacagg 428
Query: 61 ttgtgcaaatggttctttctgtagcactgtctgttccagcagcatagaagcatttcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgtgcaaatggttctttctgtagcactgtctgttccagcagcatagaagcatttcatat 368
Query: 121 taattgggtcagtctaatattcatattgacgtggggaaaaattactaaaatttattctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taattgggtcagtctaatattcatattgacgtggggaaaaattactaaaatttattctta 308
Query: 181 tagcagacaatgaatatgtgtgctttctgccatgagggaagtgaagtctggcaactggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagcagacaatgaatatgtgtgctttctgccatgagggaagtgaagtctggcaactggct 248
Query: 241 tgtgcaactgattaatttttcttaaaactggagaaaatcaaagcatg 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgtgcaactgattaatttttcttaaaactggagaaaatcaaagcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
