BAC Information

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BAC

Clone NameMSMg01-196P15
Chromosome2 (Build37)
Map Location 164,631,105 - 164,792,380
singlet/doubletdoublet
Overlap geneZswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9
Upstream geneWisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8
Downstream geneSlc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196P15.T7 (MSMg01no196_p15.b1)MSMg01-196P15.TJ (MSMg01no196_p15.g1)
ACCAG384885AG384886
length749788
length of high quality
(start - end)		315 (45 - 359)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no196_p15.b1 PHD_FILE: MSMg01no196_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:41 2005CHROMAT_FILE: MSMg01no196_p15.g1 PHD_FILE: MSMg01no196_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,792,070 - 164,792,380)(164,631,105 - 164,631,345)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCTAGTTCCCATTTCTATTTACTCCAACTTAGGTCTCTTCTCAA
TAGAACCTCTTTTTAAATTGATCCTGCCTCCAATGAAAGAGACAAGAATA
CAATCATATCTACACTACCAGCTGCCTCTGATTCTCTGCTCCAGGGGAAA
AAAATCAGCAGAGTTTGAGTCTGGGATGGGCTTTTCCCCTTCTGTGCCCA
GGTTAGAAAAATGCAGGACTAGAGGCGACCCCTTGGCTAGAGCAGTAAGC
CTCCCGTGTCTGCGAGATACTCTTAATAGGCAGGCATTTTCAGGACCTTG
GACAGAGTCTGTTTATAAGCTGGCTCTATGGAATCTGTCAGTGGTTTCAG
ACTAAGCCAACAGCGCCGTCTTCATCGATGGACTCAAAGGTGCTTCTAAG
GGATTTGCCAACAAGGTGCCTACGCCGTTTGGTTTTGAGGACACCCAGAT
AATCTGTTACGATGGAGAATTAACATTCAGACAAGATGTGAGCATTTGGC
AGATAGTGTGTTAGCTCAGTAATAAGACACAACCAAACCTGACAAGCCAA
GTTCAGACCTTAGGACCCATACCATTAAAGATGAGAACTGACTCTTGCAA
GTCATTTGCACACATTTTCTATAACAAAAACAATTTAAGAAGGTGCAAGT
ACTTTGATACCCCTTGGCTGTCCCATATTCAGCCAGTTATACTTGGCTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAACTGCATCTTGTGGTTTT
TCCGTTTTATTTGTTTGTTGAGAGCATCTATCTCAAGCGCAAGGCTGGTT
GAGGAGTGAATTGAAACGCCTTAGTAATAATTTCCTCCATTAGCCTCCTC
TTTACAAAGCAGTAATGGTGCTCATTGGTTGGTTGGTTGGTTCTTTTCGG
TGATTGATTTTGTAAATGATTCTTGAGCTCCAGATACAGCCGTTTTCAAA
CACCTTCCTTATCCAAGGCGGTGCTCCCTGTGTGCCTTCCTTGCTCTGCA
GGGTTGCGTGTTTTTTTTTCCCCCCCCCCCCCCCCCTGATTGATTTGTTT
TTAGGGTATAATAGTACCCCCCTTTTAAAAAAAAAAAAAACGGTCGGGGG
GGGGGGTCTACCTCTATCCCCCACCTTTTTTGCTCTCCCCGGCCAATACT
TACACCTCATCCTCTTATACCTTATTCCTCAATAGTCCCAATTCCTTCAC
TACTCCTTCTTCTATCATATATTCCACCCCATTTCCATTTTTTCCTTCTC
CCCCCTTTTATTTCTCTTATTCTTAGGTCCCCCTGCCTGTGTAGTCATTC
CAGTCATTCATTTATCAAGTCACCCGCTTTTTATTATTTCACCCCTACAT
CTCCTTCCTTATATTTATATTAATTCTCGTCCGCCCCTGCTTTTTTACAT
TTTTTTCTTTCCTCCCTCCACCTCTTCTCTTTCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_p15.b1 MSMg01no196_p15.b1 CHROMAT_FILE:
MSMg01no196_p15.b1 PHD_FILE: MSMg01no196_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:41 2005
         (315 letters)



>mm_chr2_164791866_164792580
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtctagttcccatttctatttactccaacttaggtctcttctcaatagaacct 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcagtctagaacccatttctatttactccaacttaggtctcttctcaatagaacct 456

                                                                       
Query: 65  ctttttaaattgatcctgcctccaatgaaagagacaagaatacaatcatatctacactac 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctttttaaattgatcttgcctccaatgaaagagacaagaatacaatcatatctacactac 396

                                                                       
Query: 125 cagctgcctctgattctctgctccaggggaaaaaaatcagcagagtttgagtctgggatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagctgcctctgattctctgctccaggggaaaaaaatcagcagagtttgagtctgggatg 336

                                                                       
Query: 185 ggcttttccccttctgtgcccaggttagaaaaatgcaggactagaggcgaccccttggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggcttttccccttctgtgcccaggttagaaaaatgcaggactagaggcgaccccttggct 276

                                                                       
Query: 245 agagcagtaagcctcccgtgtctgcgagatactcttaataggcaggcattttcaggacct 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggagcagtaagcctcccgtgtctgcgagatactcttaataggcaggcattttcaggacct 216

                      
Query: 305 tggacagagtc 315
           |||||||||||
Sbjct: 215 tggacagagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_p15.g1 MSMg01no196_p15.g1 CHROMAT_FILE:
MSMg01no196_p15.g1 PHD_FILE: MSMg01no196_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:41 2005
         (245 letters)



>mm_chr2_164630905_164631549
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtaactgcatcttgtggtttttccgttttatttgtttgttgagagcatctatctcaag 60
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cagtaactgcatcttgttgtttttccgttttatttgtttgttgagagaatctatctcaag 260

                                                                       
Query: 61  cgcaaggctggttgaggagtgaattgaaacgccttagtaataatttcctccattagcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcaaggctggttgaggagtgaattgaaacgccttagtaataatttcctccattagcctc 320

                                                                       
Query: 121 ctctttacaaagcagtaatggtgctcattggttggttggttggttcttttcggtgattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctttacaaagcagtaatggtgctcattggttggttggttggttcttttcggtgattga 380

                                                                       
Query: 181 ttttgtaaatgattcttgagctccagatacagccgttttcaaacaccttccttatccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgtaaatgattcttgagctccagatacagccgttttcaaacaccttccttatccaag 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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