BAC Information

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BAC

Clone NameMSMg01-197D17
Chromosome2 (Build37)
Map Location 57,839,620 - 57,839,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197D17.T7 (MSMg01no197_d17.b1)MSMg01-197D17.TJ (MSMg01no197_d17.g1)
ACCAG385048AG385049
length901735
length of high quality
(start - end)
---285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no197_d17.b1 PHD_FILE: MSMg01no197_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:02 2005CHROMAT_FILE: MSMg01no197_d17.g1 PHD_FILE: MSMg01no197_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCCCCCCTCTCTTCTCCTCCTCTTTTCTTTTTTCGCGCGGCTTGCA
ATCCTGTCCCACACTTCTTTTTTCTCGGCAGGCCCGGGGGTGTGCCTCCT
CTTCTCCCTTTTTTCCTCTCTCTCCAGTTTTTTTCCCCCATTTGTTCGTC
TCCCCCTGTTGCGGTCTGTTGGCCGACGGCGCGCTTTTTTTTTGAGGGGT
GTGTGTGCCGGCGCGCCGCGATGTTGGTTTCTCCCCTTTATTCCCCCGCT
ATGTGGTGTTTTTGTACCTTTTACCTTTTTCTCCTTTCTTCGATTTTTCG
TCATTCACCCCCGTTTTTTTTGCTTTTCCCCCGTTTATTTTGGGGGGTTT
CTCCGCGTCTTGTTAGCTTTGAGCGTCTGTCCCGCCCGCTTAGCGTGCTC
TGGCGGCGTGGTTTCGCGGAGAGCTGGCTGGCCGGCGTCCGGTTGATTTT
TCCCCCCCCCCTGTTTTTTCTGGCCTTAGGATGGCGCGAGTGGGGTCGGG
GGCGCCCCCCACTTCACTCTTTCGTGGCCCCGGGGCCGGGCTTAATCGTT
AGTTCGCGGTTGATTGCTGACGATGGGCGTTGCCGGCCGACGCCCGGCGC
CGTGTTATGTAGTATAGTTGTTTCGCTCCCGCACCGCGCCCTTGTTTTTC
CCGCCTGTTTTTTGATTGCCTCGGGCGGGTTACTGGTTTTGTCCACCGCT
CGCGCCGGTCTTTGGTAGCCCACGCCTTTTGGTACGAGGGAGTTGGTCTG
TGGCCGCCCTACATATGCCCTGGGGATTTGTTGATTTTGTCGTAGGCGTT
GCTTCGTGCGTTGTCTGGTCGCCGTGTTCTTCACATCGGCGTTTTATCGG
CGATCATAGCGTCACGCGGTCGTGGGAATCTAGTTGTTTGGTCGCGCGCG
N
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGACTCTGGGGAAAAACAACACCA
TTTGGTTATCTAGTACCAATTAGTTAGCCCTGGAAACATACATTCAAATA
ACATTATATGGATTGGCCCAATTATATTTAGGATATATATCCTAACTATA
AAAGACACTATGTACATACATACATATTTGGACTAAAAATGACCAATAGC
ATAAATGTTCCTATAATTTTTAAAAAGACACAGAATACATTTGTTTTATG
GTATTGAACTTTTATCCCATCAGGATTTTTCTTGTAATAATGATCTATTA
CTTTACTTATTTTTATCCCTACANACCCCATAATTATGTCACTTCTATTT
CTCCTATCCTACTTCTTCCAATAAACAAGTTCATGGCCTCTTTTTTCATT
TATATATATTAAAAGGAACCTATTTGGAAGCAAGCAAAGATAAGCAGAGA
TTAAAACAAAGGAATGTTAAGTATTTGTACCTGATGACTTTTCCTCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTTCTC
TCTTTCGTTTATAGAACAGGTAGACCAATTACAAATAGTGAAGATATATA
TATATATATATATATATATATATATAAAACAGTGAAGAGTTATATATATA
TCAGCGAGAGAGAAGGTAGAATTATAGAGCCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_d17.g1 MSMg01no197_d17.g1 CHROMAT_FILE:
MSMg01no197_d17.g1 PHD_FILE: MSMg01no197_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:02 2005
         (285 letters)



>mm_chr2_57839420_57840104
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagactctggggaaaaacaacaccatttggttatctagtaccaattagttagccctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagactctggggaaaaacaacaccatttggttatctagtaccaattagttagccctgga 260

                                                                       
Query: 61  aacatacattcaaataacattatatggattggcccaattatatttaggatatatatccta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aacatacattcaaataacattatatggattggcccaattatattttggatatatatccta 320

                                                                       
Query: 121 actataaaagacactatgtacatacatacatatttggactaaaaatgaccaatagcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actataaaagacactatgtacatacatacatatttggactaaaaatgaccaatagcataa 380

                                                                       
Query: 181 atgttcctataatttttaaaaagacacagaatacatttgttttatggtattgaactttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttcctataatttttaaaaagacacagaatacatttgttttatggtattgaactttta 440

                                                        
Query: 241 tcccatcaggatttttcttgtaataatgatctattactttactta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccatcaggatttttcttgtaataatgatctattactttactta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)