BAC Information

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BAC

Clone NameMSMg01-197E04
Chromosome2 (Build37)
Map Location 144,372,118 - 144,372,618
singlet/doubletsinglet
Overlap geneRbbp9
Upstream genePcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f
Downstream geneSec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3, LOC627312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197E04.T7 (MSMg01no197_e04.b1)MSMg01-197E04.TJ (MSMg01no197_e04.g1)
ACCAG385067AG385068
length725706
length of high quality
(start - end)
318 (45 - 362)499 (78 - 576)
definitionCHROMAT_FILE: MSMg01no197_e04.b1 PHD_FILE: MSMg01no197_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:05 2005CHROMAT_FILE: MSMg01no197_e04.g1 PHD_FILE: MSMg01no197_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCTGCCTGCCTC
TGCCTCCCGAGTGCTGGGATCAAAGGCGTGGCCACCACGCCCGGCTTAAA
CTCAGGTTCTTCGGAAGAGAAGCCAGTGCTCTTAACCACTGAGCCGTCTC
TCTAGTCCTGGCTTCTTTTTCCCAAGTATGCATTTTTAAAACTCTAAAAA
ATTTCTAGGCATGGTAAATACCAACACTCAGGAGTCCTTGGCAGGATTGT
TTTAAGTTTGAGGCCAACCTCGACTGCATAGCAAGTGCCAGACCAGGTCC
ACATGGCAAGTCTCTGTCTTAACCGACTTAATTATTGAAACTAGGGATGA
GCGAAGACAGTGTTCTCTTTCATTTTTATCTCATAGGCTACGTGTAACTT
TGAGGGCTCCGTGACAGAGCAGAGCAGGAGATACATACTTGAGGAAGTCT
GTCTCCCTCTGGATCCTCATGATCTCGGAGCTCGTCAGACTCTTCTGGCC
AGTTATGTGTGCAAAGCCAGGGGACTAAAAGGAAGAAGACAGGTAGAAGT
GACGACAAATGCACAGTCCATATAATATGGTAAAGGCTGTAGGACAGGAA
AAGTCCATTTCAAATTTCTTTGCCAACATTCATGTTTTAAACTATCATAG
GGAAAAGTCTTTGTACTTATCACTN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGGACTGTCAGCAACTTCCT
AAGAATGGACTCCTAAAGTTAACAGAGACAAAAAAAAATCCTGAACTATC
AGTGTGTAAGGGTATGAAGAAACAGGAAACTGATATAGTCATAAGGGGCA
TGCTAGCTGACTTCATTATTAAGAGATATTGAGCCTTTTCAATAGAAAGT
GCTAGAAACACCTTAACAAGCAATCAAACTTAGTATCATTGATATCGGAC
AAACGAACACATGTCTCTGAAGTGATGGCAATGCTATCTTGGGGAAAATG
TTTAATCTTGGTCCTACTGTGAGAAAACTAGTTCAGTTTAGGGAGAACAG
GCAGCACTAACTGTTTCCGCCGTGATAACATCGCTAAGGTTATTCATAGG
AGACACACACTAAGATAAGTGTAAAGTGCGGTAGCCTTAATGAATCTGGG
TACTTCTCATGTCTTCTGTGGGTTTGATATTTCTGAGTAACCAGCTGGGG
GAAAGGTGTCGGGGTCCAGCCTCAACACCGGATTGGAGTTCTCAACTGGA
AGCAGGGCTATCTAGAAGGCGCATAATAAACACACAGACAAACTCTGGGG
TACAACCTGATAGGCAATTTTTCATGGTTTAAAGTTGCACGCTTTCCTCC
GCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_e04.g1 MSMg01no197_e04.g1 CHROMAT_FILE:
MSMg01no197_e04.g1 PHD_FILE: MSMg01no197_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:05 2005
         (499 letters)



>mm_chr2_144371918_144372818
          Length = 901

 Score =  859 bits (444), Expect = 0.0
 Identities = 487/504 (96%), Gaps = 8/504 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggactgtcagcaacttcctaagaatggactcctaaagttaacagagac---aaaaa 57
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||
Sbjct: 701 attaggactgtcagcaacttcctaagaatggactcctaaagttaagagagacaaaaaaaa 642

                                                                       
Query: 58  aaaatcctgaactatcagtgtgtaagggtatgaagaaacaggaaactgatatagtcataa 117
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 641 aaaatcctgaactatcagtgtgtaagggtatgaagaaataggaaact-atatagtcataa 583

                                                                       
Query: 118 ggggcatgctagctgacttcattattaagagatattgagccttttcaatagaaagtgcta 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggggcatgctagctgacttcattattaagagatattgagccttttcaatagaaagtgcta 523

                                                                       
Query: 178 gaaacaccttaacaagcaatcaaacttagtatcattgatatcggacaaacgaacacatgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 522 gaaacaccttaacaagcaatcaaacttagtatcattgatatcggacaaaggaacacatgt 463

                                                                       
Query: 238 ctctgaagtgatggcaatgctatcttggggaaaatgtttaatcttggtcctactgtgaga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctctgaagtgatggcaatgctatcttggggaaaatgtttaatcttggtcctactgtgaga 403

                                                                       
Query: 298 aaactagttcagtttagggagaacaggcagcactaactg--tttccgccgtgataacatc 355
           |||||||||||||||||||||||||||||||||||||||  |||  |  |||||||||||
Sbjct: 402 aaactagttcagtttagggagaacaggcagcactaactggtttt--ggtgtgataacatc 345

                                                                       
Query: 356 gctaaggttattcataggagacacacactaagataagtgtaaagtgcggtagccttaatg 415
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 344 gctaaggttattcataggagacacacgctaagataagtataaagtgcggtagccttaatg 285

                                                                       
Query: 416 aatctgggtacttctcatgtcttctgtgggtttgatatttctgagtaaccagctggggga 475
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 284 aatctgggtacttctcttgtcttctgtggatttgatatttctgagtaaccagctggggga 225

                                   
Query: 476 aaggtgtcggggtccagcctcaac 499
           ||||||||||||||||||||||||
Sbjct: 224 aaggtgtcggggtccagcctcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 901
Length adjustment: 10
Effective length of query: 489
Effective length of database: 891
Effective search space:   435699
Effective search space used:   435699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)