BAC Information

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BAC

Clone NameMSMg01-197G02
Chromosome2 (Build37)
Map Location 88,430,601 - 88,430,817
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528
Downstream geneOlfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197G02.T7 (MSMg01no197_g02.b1)MSMg01-197G02.TJ (MSMg01no197_g02.g1)
ACCAG385134AG385135
length738897
length of high quality
(start - end)
---230 (138 - 367)
definitionCHROMAT_FILE: MSMg01no197_g02.b1 PHD_FILE: MSMg01no197_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:14 2005CHROMAT_FILE: MSMg01no197_g02.g1 PHD_FILE: MSMg01no197_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATATCTGAGCAGAAAACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATATAAACACAACTTCTTCANTATCCTCCCTACATAANNTATTATTTTTT
TTTCTNNTTAAACCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATTTTTCCTA
AAACTAAAAGCAGTTACAATCTATATTATTTCTCCTAGTTCAATATGTAA
TGCTAAATATGAATGACATGTATTATATAATTTCATTATGGTAATTATCC
TCTAAAATAAATTCATGCCTCCTTTGCTTATTTTATACAACAATTCAGTA
TTAAAACTCAGTGACACTCCTATAAAGTATATAGTACATACAGCATATAT
ATATATATATGTGCGCTGGGTGAGAGAATTTATGATGATAATCAGCTGAA
TTCACCCACCGCGATACTTTTTTTTTTTACCCCCCCCCCCCCCATATACT
TGAACAATTTTCAACCTCTAAATAACTTTGTTCCCCTAGATAAAACACAA
ATTATTCTTTCATTGCTTTGCTTCATATTTTTCATTATCTCCGTAAATAT
TACATCATTCCTACGCACTCTAATTTATATAAAAACAAACACACACCCAT
TCCGCCCAACTCGTATTTAAAATATAAAGTTCCTATCTCCTACCCTTTTT
CACCCTGCCCGCCTTACCGTTCACCCCAACATTCTAACTCTTCTTTATAC
TTATTTATTACCGTAATTCCACGCTCCTCTTCCTTTTCTTTTAATTCCCC
TATTTACATTTCACCCACTTATCCTCCTTATTTTTTTTCCCCCATCCACT
TTCTTTTTTCTCCTCTAACCTCCTGTGACTTATACCTTTCCTTTTTGTCA
ATTTTATCCGCCCTGGGCCTTTTCTTCCTACCCATTTCTTCCTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_g02.g1 MSMg01no197_g02.g1 CHROMAT_FILE:
MSMg01no197_g02.g1 PHD_FILE: MSMg01no197_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:14 2005
         (230 letters)



>mm_chr2_88430401_88431030
          Length = 630

 Score =  412 bits (213), Expect = e-120
 Identities = 216/217 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatttttcctaaaactaaaagcagttacaatctatattatttctcctagttcaatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agcatttttcctaaaactaaaagcagttacaatctatattatttctcctagttcaatatg 358

                                                                       
Query: 61  taatgctaaatatgaatgacatgtattatataatttcattatggtaattatcctctaaaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tagtgctaaatatgaatgacatgtattatataatttcattatggtaattatcctctaaaa 298

                                                                       
Query: 121 taaattcatgcctcctttgcttattttatacaacaattcagtattaaaactcagtgacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taaattcatgcctcctttgcttattttatacaacaattcagtattaaaactcagtgacac 238

                                                
Query: 181 tcctataaagtatatagtacatacagcatatatatat 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tcctataaagtatatagtacatacagcatatatatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)