BAC Information

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BAC

Clone NameMSMg01-197N15
Chromosome2 (Build37)
Map Location 110,495,980 - 110,496,262
singlet/doubletsinglet
Overlap genenone
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197N15.T7 (MSMg01no197_n15.b1)MSMg01-197N15.TJ (MSMg01no197_n15.g1)
ACCAG385416AG385417
length697731
length of high quality
(start - end)		650 (45 - 694)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no197_n15.b1 PHD_FILE: MSMg01no197_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:52 2005CHROMAT_FILE: MSMg01no197_n15.g1 PHD_FILE: MSMg01no197_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAATTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCAACCCTCTTCAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTATTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTT
GTCGATTCTCACTTTAAACAGATACCACATACCAAAATTAAATTAAGAAT
AGGTAAACTATCTAAACAGTCCTATACCCCCTAAGGAAATAGAAGGCATT
AAAAACCTCCCAACCAAAAGAAGCCCGGGACGAGATGGTTTTAGTACAGA
ATTCTACTCTTACTTCCTCTTTCCCAGAAGAGATGATATCAAACACTCCT
CAAACTATTCCACGAAATAGAAACAGAAGGAGTACTACCTAATTCATTCC
ATAAAGCCACAGTTATGCTGATACCTAAACCACACAAAGACCCAACAAAG
GAACAGAACTTCAAACCAACTTTGCTTATGAAGATTGATTTAAAAATACT
TAATAACATTCTAGGAAACCAAATTCTAGAACATACCAAAATGATCATTC
ACTATGATCAAGTAGGTTTCATTCCTGGGATTCAGGGGTGGTTCAATATA
CAGAAGTCCATCAATGTAATCCACTATATAAAAAGAAAACTCAAAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACACAAATCCTTGTTCCTGGGG
CTCTTCTATTACAGAAGATATAATGGCTGATTTCATCAATTATCAAATAG
GATTTTCAGCTCCTCTGTTTGGGAGCGTTTGTGCTCCATTTTCTTCATTA
ATGTATCCACATACCTGAGCATATTTTGTTTACTTAACATTTACATCTTT
TCCAAATTAGGGATGCAAGACAGACACGTGTCTTACAGTAGGATATACAA
TAATCGCCTTTTCCTTGAGAATTCTTTTTCTAGGGTTTTCTATACAGCAA
TAGGGTTTATTTAATATTGACCGACATGAACAGAGAAAGATATTTTAATA
AATGTTGTAGTATATTAATTTAGAAATATCTTCACTGATATTTTTGAGAT
GGACAGGAGAAAACAGAACCAAAAAAAAATTTATCTGATGTATTTGTTTC
TTAAACAGTGCAGGACAATCAAACTTTGTTTCCTCATCACTGATAGCAAA
ACACAGACAGCCCCTCACAGTATGTTAGCTTTATTAGATCACACTACTTA
AGTTGAGAGAAATGTTTTATACATGCTTTTCATATGAATATAAATTCTTT
CTCGAAGATTTATAGCACACACTATTCTCAGGAATTCTGTATGATGTGAA
TGCTGCTCATATATTTTCATATTCTTGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_n15.g1 MSMg01no197_n15.g1 CHROMAT_FILE:
MSMg01no197_n15.g1 PHD_FILE: MSMg01no197_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:53 2005
         (282 letters)



>mm_chr2_110495780_110496462
          Length = 683

 Score =  495 bits (256), Expect = e-144
 Identities = 276/286 (96%), Gaps = 7/286 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacacaaatccttgttcctggggctcttctattacagaagatataatggctgatttcat 60
           |||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||
Sbjct: 483 caacacaaatccttgttcctggggctcttctactac---agatataatggctgatttcat 427

                                                                       
Query: 61  caattatcaaataggattttcagctcctctgtttgggagcgtttgtgctccattttcttc 120
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 426 caattatcaaataagattttcagctcctctgtttggaagcgtttgtgctccattttcttc 367

                                                                       
Query: 121 ----attaatgtatccacatacctgagcatattttgtttacttaacatttacatcttttc 176
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attaattaatgtatccacatacctgagcatattttgtttacttaacatttacatcttttc 307

                                                                       
Query: 177 caaattagggatgcaagacagacacgtgtcttacagtaggatatacaataatcgcctttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 caaattagggatgcaagacagacacgtgtcttacagtaggatatacaataatcgcctttt 247

                                                         
Query: 237 ccttgagaattctttttctagggttttctatacagcaatagggttt 282
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccttgagaattctttttctagggttttctatacagcaatagggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space:   184002
Effective search space used:   184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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