BAC Information

Click to search

BAC

Clone NameMSMg01-197O20
Chromosome2 (Build37)
Map Location 161,012,007 - 161,012,398
singlet/doubletsinglet
Overlap genenone
Upstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694
Downstream geneLOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197O20.T7 (MSMg01no197_o20.b1)MSMg01-197O20.TJ (MSMg01no197_o20.g1)
ACCAG385465AG385466
length1,620716
length of high quality
(start - end)
---385 (69 - 453)
definitionCHROMAT_FILE: MSMg01no197_o20.b1 PHD_FILE: MSMg01no197_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:59 2005CHROMAT_FILE: MSMg01no197_o20.g1 PHD_FILE: MSMg01no197_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATAAGTTGGGAAGATATATAATAGTAACCATTATAGAATAATGTTC
TAGTCGTACAGTAAGGTGCTGGATAAGAATATGATGATGAATAGTATGTA
TGATAAGGATGGGGTTGCTGAGGGCCNAGAGTATAATATATAGGCGNAGT
AAGAGAAAGAGGTGGTGTATCACGAGAGTGATGGTGTGGGACGGTCGTCC
GTGAGAGTTTTATTGATCAGAATATTTGGTTATGNGGGTTTATACTGCGG
CTGCTGTTTAGCGGCGAGGGCATATGACAGCACCCCCGCGCGCCCGACCG
CGCCATCAGTTTGTCTATCTAGTGATACGAGCCGTCACGTCGCGCACCGC
CCGGCGTCTGACTATCGGAGTTGTGAGTGTGTTGTGTGGGGATATGTGGA
CCGCGTAGACTGCGCGCTTCGCGCGCCCACGGTAGGGGCGCCGCGGAATG
ACGACGACTGTGTGCGTCTGTGCGCACATAGTTGATCGCAGCTGGTTGTG
CTTTGGCGATCGGAAAGGCCGTGAGTGCACGGTGGGGAGGAGGGTGTGTG
GATGGTGATGGGGGTTAGTGCGGAGGAGGCACACGGTGGTGAGTGAGCGC
GGCGTAGCTGTCGGCGGCGGGAGAGAGAAGAGGGAGAAGTGGCGCGGGCT
GCTGTGGATGATNATTGTTGCTATGAGTATGATAGCTTGTTGTAGCGCGC
GCGTCGCTGATGCGCGTCGACGCGGGCATGACACGGTAATTATATGTTAC
GAGTGGGCTGCAGATCTAACCGGCGCGGATGATGAATATAATTGATGGTA
TGGCGCGCGCCGGGCGTTGTATGGGTCGATGGATGAAGAGAGAAGATTGA
TAGGCTGAGGAGCAGACGGTGCGCGCGGAGACGCTGTGATGTGATGTGTT
ATAGGTGCATGAAGCTGATCGGATCAAGGGGAGATAGATGATGCGGTTGC
TGGTCGATGGGCGTTATGAGCACTAGATACGCGGTCAGTGCAGAGATTNG
GTAAGACAGAGATGTATCGAATGGTATCATGATCGCCAGTAGCGCCGTGC
GATCGTCTCTGTTGTGTATGTATGTGGAGCCGGCCGCCGGAGCTGCGCGA
CCTGCCGTGACGCGGNCACTGGTGGTACAAAGATGAGATAGAATATAGAG
GAGACAAGAGANGANGTGTAGTTGTAAGCGTAGGATCGCGCGCGCACCGC
CGCGCCGGCCGCGCACGCTGACCGACTGTATGTTGTGAGTATGNTGCGCA
CACCGTCGCTCCGTGTCTGCGCGAGGCGCCGTGCGCCGCGGTGGTGGAGC
GACAGCCTCGCACGTATTGTTTATATGNCGGCATCGCGNGCGCTGTCTGC
GGAGTATATTGGGACATTATGTGTGCGCTGCGCTGACGCGCCGAATGAGT
GTGCGAGTGTGTGCTAGATGATTAGATACGCGACAACAGTTGCTGCGCTA
TTGAGAGGATGTGTTGCCGTCATATTGTTCGTTTTTTCAGCNCGAGTGTT
CACCNGCCGCAGTAGTCGTTGATCTACGTCNTNGGCTCCATGTAAGCGCG
ACCGTCGACGCTCNCTCTCGCGTCGTCCCTCGTCTCTTATTAGATGAGCC
TGNGCGCCGCTCTGTCTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACCAGCGAAATTCTCTGAGATCATGGAACCAATTTCCATC
ACATACTCTGCCATGATATTCTGCCTCACTGCGGTTGAGAAGTGAGGTCT
GAGTGACTTTGTAACTTTGAACCAAAGTTTGTTGTTGTTTTTTTCAGGTT
TCTTTTGCTGTAGTTATGACTGACACAGGAGGGCAGAGACTTCAATTGTC
TTGCTTACTGCAATACCTGTGATATCTAACACAGAGCTCGGAATAGAGTA
GGGTTCCTGGAAACTTTTGAAAGAATGGTGAGCTGTAATCTTGGATGAGA
CATTCTATTATCTGGTAACTATGGCTTATTAAGCTTTTAGCACATGCCAG
ATGCACATGCTTGGTTGATGTATTTAGGTGTATGAGAACATGTCTTATGT
GGGACAGGGAATTTGCATTTTTGAAAGCTTTCCTCATGACCCTGATGTCT
GCGATGAACAGAGTCTACCTTGTGGGGCTCCAGCTTTCATACTTAAGATC
ATGGGTGAATGGATGAGATGAACCTGTATTTGTGAATGTTGACACGGACA
GTCACTTATGGATGCATGACTGAAATGATACTCCTGATCAATGTGTGACT
AAGATTTAATTATTTCCAAATAGAATATTCAATTTTTGTCTACCTGCCTT
GATCCCCTTTTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_o20.g1 MSMg01no197_o20.g1 CHROMAT_FILE:
MSMg01no197_o20.g1 PHD_FILE: MSMg01no197_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:59 2005
         (385 letters)



>mm_chr2_161011814_161012598
          Length = 785

 Score =  669 bits (346), Expect = 0.0
 Identities = 378/392 (96%), Gaps = 7/392 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctctgagatcatggaaccaatttccatcacata--ctctgccatgatattctgcct 58
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 194 aattctctgagatcatggaaccaatttccatcacatactctctgccatgatattctgcct 253

                                                                       
Query: 59  cactgcggttgagaagtgaggtctgagtgactttgtaactttgaaccaaagtttgttgtt 118
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 254 cactgcggttgagaaatgaggtctgagtgactttgtaactttgagccaaagtttgttgtt 313

                                                                       
Query: 119 gt-----ttttttcaggtttcttttgctgtagttatgactgacacaggagggcagagact 173
           ||     ||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct: 314 gttgttgttttttcaggtttcttttgttgtagttatgactgacacagcagggcaaagact 373

                                                                       
Query: 174 tcaattgtcttgcttactgcaatacctgtgatatctaacacagagctcggaatagagtag 233
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 374 tcaattgtcttgcttactgcaatacctgtgatatctaacacagagcttggaatagagtag 433

                                                                       
Query: 234 ggttcctggaaacttttgaaagaatggtgagctgtaatcttggatgagacattctattat 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 434 ggttcctggaaacttttgaaagaatggtgagctgtaatcttggatgagacattcgattat 493

                                                                       
Query: 294 ctggtaactatggcttattaagcttttagcacatgccagatgcacatgcttggttgatgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctggtaactatggcttattaagcttttagcacatgccagatgcacatgcttggttgatgt 553

                                           
Query: 354 atttaggtgtatgagaacatgtcttatgtggg 385
           ||||||||||||||||||||||||||||||||
Sbjct: 554 atttaggtgtatgagaacatgtcttatgtggg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)