MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-198C23
Chromosome	2 (Build37)
Map Location	125,405,994 - 125,406,308
singlet/doublet	singlet
Overlap gene	Cep152
Upstream gene	Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
Downstream gene	Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sema6d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214968 MGI:2387661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	LOC100043367 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC100043369 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043369
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Slc24a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:317750 MGI:2677271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myef2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17876 MGI:104592
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043375 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Slc12a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20495 MGI:103150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Dut (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110074 MGI:1346051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A530010F05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214394 MGI:2685406
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100043698 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Fbn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14118 MGI:95489
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cep152 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99100 MGI:2139083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Shc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271849 MGI:2655364
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eid1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58521 MGI:1889651
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3110001I20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70354 MGI:1917604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cops2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12848 MGI:1330276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Galk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69976 MGI:1917226
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgf7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14178 MGI:95521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dtwd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69185 MGI:1916435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp8b4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241633 MGI:1859664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc27a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26458 MGI:1347099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sema6d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40385868 GeneID:214968 MGI:2387661
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D transcript_id : NM_172537.2

name	Sema6d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40385870 GeneID:214968 MGI:2387661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D transcript_id : NM_199239.1

name	Sema6d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40385878 GeneID:214968 MGI:2387661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D transcript_id : NM_199241.1

name	Sema6d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40385876 GeneID:214968 MGI:2387661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D transcript_id : NM_199240.1

name	Sema6d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40385874 GeneID:214968 MGI:2387661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D transcript_id : NM_199238.1

name	LOC100043367 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249986 GeneID:100043367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100043367 transcript_id : XM_001480048.1

name	Slc24a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110681723 GeneID:317750 MGI:2677271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 24, member 5 transcript_id : NM_175034.3

name	Myef2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27819593 GeneID:17876 MGI:104592
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myelin basic protein expression factor 2, repressor transcript_id : NM_010852.1

name	LOC100043375 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249988 GeneID:100043375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043375 transcript_id : XM_001480066.1

name	Slc12a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226230 GeneID:20495 MGI:103150
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 12, member 1 transcript_id : NM_183354.2

name	Slc12a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226232 GeneID:20495 MGI:103150
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 12, member 1 transcript_id : NM_001079690.1

name	Dut (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802974 GeneID:110074 MGI:1346051
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : deoxyuridine triphosphatase transcript_id : NM_023595.5

name	A530010F05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250102 GeneID:214394 MGI:2685406
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA A530010F05 gene transcript_id : XM_001480707.1

name	LOC100043698 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250104 GeneID:100043698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043698 transcript_id : XM_001480710.1

name	Fbn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118197276 GeneID:14118 MGI:95489
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibrillin 1 transcript_id : NM_007993.2

name	Cep152 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487355 GeneID:99100 MGI:2139083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrosomal protein 152 transcript_id : NM_001081091.1

name	Shc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579887 GeneID:271849 MGI:2655364
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SHC (Src homology 2 domain containing) family, member 4 transcript_id : NM_199022.2

name	Eid1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372222 GeneID:58521 MGI:1889651
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EP300 interacting inhibitor of differentiation 1 transcript_id : NM_025613.2

name	3110001I20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487340 GeneID:70354 MGI:1917604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110001I20 gene transcript_id : NM_177608.3

name	Cops2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909326 GeneID:12848 MGI:1330276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) transcript_id : NM_009939.2

name	Galk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341000 GeneID:69976 MGI:1917226
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : galactokinase 2 transcript_id : NM_175154.2

name	Fgf7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328444 GeneID:14178 MGI:95521
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 7 transcript_id : NM_008008.3

name	Dtwd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312231 GeneID:69185 MGI:1916435
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DTW domain containing 1 transcript_id : NM_026981.1

name	Atp8b4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803387 GeneID:241633 MGI:1859664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, class I, type 8B, member 4 transcript_id : NM_001080944.2

name	Slc27a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113374153 GeneID:26458 MGI:1347099
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 27 (fatty acid transporter), member 2 transcript_id : NM_011978.2

name	Sema6d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40385871 GeneID:214968 MGI:2387661
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA] codon_start : 1 note : isoform 5 is encoded by transcript variant 5; semaphorin 6D product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D isoform 5 protein_id : NP_954709.1

name	Sema6d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40385869 CCDS:CCDS16670.1 GeneID:214968 MGI:2387661
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; semaphorin 6D product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D isoform 1 protein_id : NP_766125.2

name	Sema6d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40385879 CCDS:CCDS16673.1 GeneID:214968 MGI:2387661
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; semaphorin 6D product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D isoform 4 protein_id : NP_954711.1

name	Sema6d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40385877 CCDS:CCDS16672.1 GeneID:214968 MGI:2387661
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA] codon_start : 1 note : isoform 6 is encoded by transcript variant 6; semaphorin 6D product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D isoform 6 protein_id : NP_954710.1

name	Sema6d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40385875 CCDS:CCDS16671.1 GeneID:214968 MGI:2387661
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; semaphorin 6D product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D isoform 2 protein_id : NP_954708.1

name	LOC100043367 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249987 GeneID:100043367
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480098.1

name	Slc24a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110681724 GeneID:317750 MGI:2677271
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015297 - antiporter activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Na-Ca exchanger 5; K-independent Na+/Ca2+ exchanger JSX; sodium/potassion/calcium exchanger 5 product : solute carrier family 24, member 5 precursor protein_id : NP_778199.2

name	Myef2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819594 GeneID:17876 MGI:104592
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : myelin basic protein expression factor 2, repressor protein_id : NP_034982.1

name	LOC100043375 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249989 GeneID:100043375
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480116.1

name	Slc12a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226231 GeneID:20495 MGI:103150
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA]; GO:0015377 - cation:chloride symporter activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0006821 - chloride transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform A is encoded by transcript variant 2 product : solute carrier family 12, member 1 isoform A protein_id : NP_899197.2

name	Slc12a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226233 GeneID:20495 MGI:103150
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA]; GO:0015377 - cation:chloride symporter activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0006821 - chloride transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform F is encoded by transcript variant 3 product : solute carrier family 12, member 1 isoform F protein_id : NP_001073158.1

name	Dut (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21281687 CCDS:CCDS16675.1 GeneID:110074 MGI:1346051
definition	GO_function : GO:0004170 - dUTP diphosphatase activity [Evidence IEA] GO_process : GO:0046080 - dUTP metabolism [Evidence IEA] codon_start : 1 product : deoxyuridine triphosphatase protein_id : NP_076084.2

name	A530010F05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250103 GeneID:214394 MGI:2685406
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480757.1

name	LOC100043698 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250105 GeneID:100043698
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480760.1

name	Fbn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118197277 CCDS:CCDS16676.1 GeneID:14118 MGI:95489
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA]; GO:0001527 - microfibril [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0008061 - chitin binding [Evidence IEA]; GO:0005201 - extracellular matrix structural constituent [Evidence IEA] GO_process : GO:0006030 - chitin metabolism [Evidence IEA] codon_start : 1 note : tight skin product : fibrillin 1 protein_id : NP_032019.2

name	Cep152 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487356 GeneID:99100 MGI:2139083
definition	codon_start : 1 product : centrosomal protein 152 protein_id : NP_001074560.1

name	Shc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841043 CCDS:CCDS16678.1 GeneID:271849 MGI:2655364
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : rai-like protein; novel phosphotyrosine interaction domain (PTB/PID) and SH2 domains containing protein product : rai-like protein RaLP protein_id : NP_950187.1

name	Eid1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385068 GeneID:58521 MGI:1889651
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0016566 - specific transcriptional repressor activity [Evidence ISS] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : E1A-like inhibitor of differentiation product : CREBBP/EP300 inhibitory protein 1 protein_id : NP_079889.1

name	3110001I20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487341 GeneID:70354 MGI:1917604
definition	codon_start : 1 product : hypothetical protein LOC70354 protein_id : NP_808276.2

name	Cops2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909327 CCDS:CCDS16679.1 GeneID:12848 MGI:1330276
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA]; GO:0008180 - signalosome complex [Evidence IDA] [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence ISS]; GO:0003714 - transcription corepressor activity [Evidence IDA] GO_process : GO:0008283 - cell proliferation [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0007165 - signal transduction [Evidence ISS]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : alien homologue; COP9 (constitutive photomorphogenic, subunit 2 product : COP9 (constitutive photomorphogenic) homolog, subunit 2 protein_id : NP_034069.2

name	Galk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424748 CCDS:CCDS16680.1 GeneID:69976 MGI:1917226
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA] codon_start : 1 product : galactokinase 2 protein_id : NP_780363.1

name	Fgf7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679785 CCDS:CCDS16681.1 GeneID:14178 MGI:95521
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0005104 - fibroblast growth factor receptor binding [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0008283 - cell proliferation [Evidence IEA]; GO:0008284 - positive regulation of cell proliferation [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : Keratinocyte growth factor product : fibroblast growth factor 7 protein_id : NP_032034.1

name	Dtwd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312232 CCDS:CCDS16682.1 GeneID:69185 MGI:1916435
definition	codon_start : 1 product : DTW domain containing 1 protein_id : NP_081257.1

name	Atp8b4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124301186 GeneID:241633 MGI:1859664
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0031177 - phosphopantetheine binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006812 - cation transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : ATPase 8B4, p type; ATPase B4, class I product : ATPase, class I, type 8B, member 4 protein_id : NP_001074413.1

name	Slc27a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113374154 CCDS:CCDS16683.1 GeneID:26458 MGI:1347099
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence TAS] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence TAS] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0001676 - long-chain fatty acid metabolism [Evidence TAS]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : very long-chain acyl-Coenzyme A dehydrogenase synthase product : solute carrier family 27 (fatty acid transporter), member 2 protein_id : NP_036108.2

name	LOC100043369 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043369
definition	number : 2 pseudo : _no_value

name	LOC100043369 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043369
definition	number : 1 pseudo : _no_value

clone name	MSMg01-065C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318L13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-368O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017L03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-198C23.T7 (MSMg01no198_c23.b1)	MSMg01-198C23.TJ (MSMg01no198_c23.g1)
ACC	AG385620	AG385621
length	727	1,122
length of high quality (start - end)	319 (45 - 363)	---
definition	CHROMAT_FILE: MSMg01no198_c23.b1 PHD_FILE: MSMg01no198_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:20 2005	CHROMAT_FILE: MSMg01no198_c23.g1 PHD_FILE: MSMg01no198_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:20 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATGAAGCCACTGTACGCCAGTAAATAAATGTCAGTGTTGTTTGCTAGGTA ACACGCAGACCATGAGTGTGTGTCACACACACACTACTCTCACACAGAAC ATGTTTGTGTGTCTGAAATATCTCAAAGGAAATCTTTCAGAGGGAAAGGG GTCACAGAAACAGTATGGTGCTGAGACCCCCAAGGTCAGGGAAAGGAATA AAGCTGGTTAGGCAGGAGAACACAGGAGCCTGAAGGTCCTCACGAATTCA GAAGGCACTCATACCCCAGCACCGAGGAGGCTGAGGCTGGGAGATTGCTG CACACACACACACTTTCTACACACACACACACATCAGAGGAGATCCTTAA GTCTAGTATAAGCATCTTTTCACAGCCAGATTTATTTTTCTCTTTGTATT TGAAATTGCTCTTTCATTTGTGAGGTTAGCCCAGATACTTAGGAGTTGTT GATAGTAAAGACTGTCAGAGACTTCCAGCTATGTGCTGCTGTACCACGGG TACTGCTATACCTTTCAAATGTGTGCTGCTGTGTCTTTTAGCTGTCACTC GCACTCTCTGAAGCTAAAGAGACGTGGAAAAGTGAGCTGGAAAATATGAA GCCAAATGTCATGTCTGTCAAGGAGCTGGAGGAGAAAGTCCACTCTCTGC AGAAGGAGCTGGAGTTGAAGGATGAGG	TGCTTCTCCTCGGTCGCGCACGTTTATCGCGTTAGTGACCTTTTATCGCC TATCCCCCGTAACTAACTAACGGACACGCTTGTACGTTGGGATCTGCATT GAGGTTCTCAGGCGTCCGCGTTTGGTGCTAAGAAAAAATGAGGCTATGAG ACTTATATGTGATGACACGAGCGTACCTCCGAGGCGTGATTTGCTTCACG GCATGCTAATTGTNCACCGCTAATTTCGCGACGTCCCGCAAATACGCGAC CTCGCCCCCCCCTATTTTTTGACGCGCGGATATGTTCCGCCTGAACGAGC TCTTTATTTAGGATCCTATCGTTCCGATGCGCAGAGCGCGCCGCCATTGT TATAGCCGCCTGTTTTTTCGTACGTGCTTCGTATTCGCGCCGCGCGTTTT ACCTCGCTACCGAACGCCGCGGTTTGTTTGCTCCGCGGATGCAGTCTCTA CCGTAAAGTCTGTTGTGGCGTTATATATCCGGTTTATCTTCGCGCGATCG ATCGCCCGAGCCCGTCGCGACTTCTGCGATGGTATTCGGGATACACAGCG CGCTCACATGTTCGATACGTTCGTGCCTTTCATGTCACCCTACGTGTGTC GATTGTGACCTAAAACGCGCCGCTTCCCTATACATTTGGTTTTACCCGCG TGCCACGTCCCCGGACGCTCACACAATACAGTTGCGCGTAATGAATTTAA CTTCTCACATATGGCGGGAATTTATTTGACCGAATATAACCGTCTAGCCA GTTATACAGCCCCGTGTCGGTGTTTTTAATATGTAGCACCTAGCTGGACG CCGACTTACGAAGCATAGCTTTCCGGTTATGAGGCGCGGTTCAACACGAC TTGTCATCCGTTGTTGACCGCTTTATACGCCGCGGTTTACCATCGCAGAG ATTTTCCCGCCGTGCCGTGACTTCACTCTGTCACGCCCGGTAATATTCTT TCCCAGACCCCCCTCTTAAGCTGAATATCGTTCGTTATATTGATTGTCTG TGTCCCAGCTTATACGCCTAGTTCTATAGTATTTCTTCGCGAGGACGCCG AACGATGTGGAGTATGTGGCCTCTATTATATATTATACTGACTCACATGA TTACGCGCTCCGCGCGCTCACG
quality values	Open. Hide. 8 8 8 8 12 19 24 37 47 41 37 37 32 31 31 37 23 23 22 28 28 28 43 48 29 29 32 32 34 35 44 44 40 40 40 43 43 57 57 42 42 26 30 30 42 43 57 57 47 47 43 43 54 54 57 68 68 68 57 50 50 57 44 44 35 35 35 43 43 68 68 68 68 68 68 68 68 51 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 57 50 50 35 37 37 43 43 57 50 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 62 62 62 62 62 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 52 57 57 57 57 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 59 57 48 48 48 48 48 54 54 57 59 59 59 59 59 59 59 59 57 50 50 53 53 48 53 50 57 59 59 59 59 59 59 59 59 59 59 37 29 19 13 12 12 8 8 8 8 8 8 8 10 19 28 12 12 11 11 11 11 11 12 12 15 15 26 30 41 50 50 50 50 50 50 57 53 53 57 57 57 57 59 59 59 59 59 59 59 59 59 59 54 59 59 68 68 68 68 68 68 68 68 68 57 57 43 43 43 37 37 43 43 43 46 57 57 57 59 59 59 68 68 68 68 59 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 57 59 68 68 68 59 59 57 57 57 57 57 57 59 68 68 59 59 59 59 59 59 59 52 52 59 59 57 57 59 57 57 52 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 54 57 57 59 59 57 57 57 57 57 57 57 57 57 54 54 59 59 57 68 57 57 57 54 54 57 57 57 59 68 59 59 57 48 57 57 59 59 57 68 68 68 68 68 68 54 54 54 54 57 57 59 57 57 57 59 57 48 48 48 43 43 48 48 50 50 57 59 59 59 59 35 35 35 43 43 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 43 41 41 43 59 35 37 36 47 47 41 37 37 37 37 32 28 28 31 31 37 36 37 39 40 39 37 34 31 24 22 25 25 37 37 37 41 41 41 37 32 32 29 29 29 29 37 39 39 41 41 41 41 43 43 43 43 43 43 36 39 43 43 48 40 40 40 39 39 39 32 28 28 31 31 31 37 37 37 37 37 33 33 33 33 33 40 46 43 34 39 37 30 25 22 22 26 32 26 26 19 18 18 30 30 34 13 16 9 9 9 12 9 9 9 13 10 10	Open. Hide. 6 6 6 6 6 6 8 8 8 8 8 9 9 8 8 8 8 8 8 9 13 11 11 9 9 9 8 8 8 10 10 8 9 9 9 9 10 8 8 6 7 7 10 10 9 10 11 11 11 11 11 11 11 15 24 18 12 10 10 8 8 8 8 6 10 6 6 8 6 8 8 8 8 8 11 11 9 9 6 8 8 8 8 6 6 8 10 6 6 8 8 11 11 11 11 8 6 6 6 8 6 6 6 6 7 8 8 8 8 8 10 6 6 6 7 8 8 8 10 8 8 8 8 8 8 8 6 6 8 8 8 10 8 9 14 12 13 6 6 6 6 8 8 8 8 8 10 11 12 11 10 11 8 8 8 8 8 8 8 8 6 6 8 10 6 6 6 7 6 8 8 8 8 8 8 12 12 8 6 6 6 8 8 8 8 8 8 8 8 12 8 8 13 14 10 6 6 6 6 6 8 8 11 11 10 9 9 9 8 8 6 6 3 0 3 7 8 9 10 10 10 9 10 10 8 8 8 6 6 6 6 8 8 8 8 8 6 6 6 8 6 6 7 6 6 8 8 8 8 10 10 8 8 8 8 8 9 13 18 24 10 10 8 8 8 8 9 7 6 6 6 6 6 8 8 8 9 8 8 8 8 8 8 8 10 10 15 10 10 10 10 12 12 10 10 10 8 7 8 7 7 7 8 8 7 6 6 6 6 8 8 9 10 10 10 11 11 8 8 8 8 8 8 8 8 10 8 8 10 8 8 8 7 9 9 9 8 8 6 6 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 10 7 6 6 6 8 10 19 10 8 8 8 8 6 7 6 10 8 10 12 8 8 8 8 9 8 8 8 8 8 8 8 10 8 18 17 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 9 9 9 10 9 10 9 9 9 9 9 9 10 8 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 8 8 8 8 6 6 6 8 10 10 8 8 6 6 8 7 9 9 10 8 10 6 6 6 6 10 10 8 8 8 10 8 8 8 7 8 8 8 8 9 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 13 11 8 8 8 8 8 8 8 8 8 8 6 7 8 10 8 11 8 8 8 8 8 10 8 8 8 8 10 8 10 10 8 8 8 8 16 12 8 8 10 8 8 8 10 13 8 6 6 6 6 8 8 10 8 6 6 6 10 8 10 11 13 12 9 8 8 8 8 8 9 6 8 6 6 6 6 8 8 15 8 8 8 8 8 6 8 6 7 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 9 6 8 8 8 8 8 11 11 12 11 11 11 9 7 7 7 7 7 8 11 11 8 8 6 6 6 6 8 6 6 6 9 11 8 8 6 6 8 6 8 8 8 9 9 10 10 10 8 8 8 8 8 8 10 8 8 8 8 10 11 13 11 10 8 8 8 8 8 8 9 9 9 9 9 10 10 10 8 8 7 7 8 8 8 9 10 8 8 8 8 8 9 8 8 8 8 8 8 6 6 6 6 8 9 9 9 8 10 6 6 8 8 6 6 8 8 11 11 11 10 11 18 12 10 8 8 8 10 10 10 8 6 6 6 6 6 8 8 8 8 8 6 6 6 6 8 6 10 22 17 17 11 11 6 8 6 7 8 8 8 9 8 10 8 8 6 6 6 6 8 8 8 8 8 8 8 6 6 6 7 7 8 8 8 7 9 8 10 8 11 10 12 8 8 6 6 6 6 6 8 8 8 8 8 8 18 13 10 7 7 7 8 10 11 7 6 8 8 8 10 7 6 6 8 8 8 8 8 8 8 10 8 8 8 8 8 12 9 9 10 10 8 8 8 8 8 8 10 10 10 10 8 8 6 6 6 8 12 11 12 9 9 9 9 6 8 6 6 6 8 8 10 8 6 6 8 8 8 8 12 8 6 8 8 6 6 6 10 6 6 6 8 8 8 8 10 10 8 8 8 8 8 8 8 10 8 8 6 6 6 6 8 8 10 11 10 6 6 6 6 8 8 7 6 7 6 8 8 6 6 8 6 6 10 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 12 13 10 10 10 9 9 9 8 8 8 8 8 8 8 8 8 7 6 6 6 6 6 6 8 8 8 8 8 8 8 8 10 13 8 6 6 6 10 10 8 8 8 8 8 9 9 9 7 7 9 9 9 8 8 7 6 6 6 6 10 11 13 12 8 8 8 8 8 8 8 8 8 8 12 8 10 10 9 9 12 9 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 9 19 13 15 10 10 12 12 10 12 10 7 6 6 6 6 6 6 6 8 8 8 8 8 7 8 6 6 6 8 8 8 10 10 8 8 8 8 8 8 8 6 12 7 7 7 10 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no198_c23.b1 MSMg01no198_c23.b1 CHROMAT_FILE:
MSMg01no198_c23.b1 PHD_FILE: MSMg01no198_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:20 2005
         (319 letters)



>mm_chr2_125405790_125406508
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaatgaagccactgtacgccagtaaataaatgtcagtgttgtttgctaggtaacacgcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaatgaagccactgtacgccagtaaataaatgtcagtgttgtttgctaggtaacacgcag 460

                                                                       
Query: 65  accatgagtgtgtgtcacacacacactactctcacacagaacatgtttgtgtgtctgaaa 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 accatgagtgtgtgtcacacatacactactctcacacagaacatgtttgtgtgtctgaaa 400

                                                                       
Query: 125 tatctcaaaggaaatctttcagagggaaaggggtcacagaaacagtatggtgctgagacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tatctcaaaggaaatctttcagagggaaaggggtcacagaaacagtatggtgctgagacc 340

                                                                       
Query: 185 cccaaggtcagggaaaggaataaagctggttaggcaggagaacacaggagcctgaaggtc 244
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cccaaggccaggggaaggaataaagctggttaggcaggagaacacaggagcctgaaggtc 280

                                                                       
Query: 245 ctcacgaattcagaaggcactcataccccagcaccgaggaggctgaggctgggagattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctcacgaattcagaaggcactcataccccagcaccgaggaggctgaggctgggagattgc 220

                          
Query: 305 tgcacacacacacac 319
           |||||||||||||||
Sbjct: 219 tgcacacacacacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information