Query= MSMg01no198_h04.b1 MSMg01no198_h04.b1 CHROMAT_FILE:
MSMg01no198_h04.b1 PHD_FILE: MSMg01no198_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:41 2005
(318 letters)
>mm_chr2_109978574_109979291
Length = 718
Score = 601 bits (311), Expect = e-176
Identities = 311/311 (100%)
Strand = Plus / Minus
Query: 5 gaattcacatattcgaaagaaaataaccataaaggcctaaggaagagtaatggtcttagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaattcacatattcgaaagaaaataaccataaaggcctaaggaagagtaatggtcttagt 270
Query: 65 gactcctgggtgggttgaacaagtataaaatttagatgataaatctaaattcatctcttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gactcctgggtgggttgaacaagtataaaatttagatgataaatctaaattcatctcttc 210
Query: 125 aaacatttttaagactttttattgattctttgtgaattttataccatgcaccccaatctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaacatttttaagactttttattgattctttgtgaattttataccatgcaccccaatctt 150
Query: 185 actcacctccccattttttcatacctaccctttgcccttataacctccccaaaagaaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 actcacctccccattttttcatacctaccctttgcccttataacctccccaaaagaaaac 90
Query: 245 aataatattaaaaaaaatactactacaaccacaaacaaacaaaatctcactgtggaaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aataatattaaaaaaaatactactacaaccacaaacaaacaaaatctcactgtggaaaat 30
Query: 305 gcagtgtgtca 315
|||||||||||
Sbjct: 29 gcagtgtgtca 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_h04.g1 MSMg01no198_h04.g1 CHROMAT_FILE:
MSMg01no198_h04.g1 PHD_FILE: MSMg01no198_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:41 2005
(286 letters)
>mm_chr2_109818223_109818908
Length = 686
Score = 435 bits (225), Expect = e-126
Identities = 265/287 (92%), Gaps = 17/287 (5%)
Strand = Plus / Plus
Query: 2 aacagttcactggtaaagtgacacaggatacaaaaagtgtagagaggcacatgaaaccac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aacagttcactggtaaagtgacacaggatacaaaaagtgtagagaggcacatgaaaccac 261
Query: 62 agattgttggttcctttatgtattgtaatcaatgatggttatttgttcttttcttttttt 121
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 262 agattgttggttcctttatgtattgtaatctatgatggttatttgttctttt----tttt 317
Query: 122 aaa---ttaggtattttcctcatttacatttccaatgctatcccaaaagtcccc-atacc 177
||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 318 aaaaaattaggtattttcctcatttacatttccagtgctatcccaaaactcccccatacc 377
Query: 178 ctcccacccactcccctaccccccctcccccactcccactttttggccctgacgttcccc 237
||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 ctcccccccactcccctacccc---------actcccactttttggccctgacgttcccc 428
Query: 238 tgtactggggcatataaagtttgcaagtccaatgggcctctctttcc 284
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 429 tgtactggggcatataaagtttgcaagttcaatgggcctctctttcc 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
