BAC Information

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BAC

Clone NameMSMg01-198K07
Chromosome2 (Build37)
Map Location 81,079,916 - 81,080,225
singlet/doubletsinglet
Overlap genenone
Upstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198K07.T7 (MSMg01no198_k07.b1)MSMg01-198K07.TJ (MSMg01no198_k07.g1)
ACCAG385881AG385882
length700722
length of high quality
(start - end)
316 (23 - 338)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no198_k07.b1 PHD_FILE: MSMg01no198_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:56 2005CHROMAT_FILE: MSMg01no198_k07.g1 PHD_FILE: MSMg01no198_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAAATTAAAGTTAATA
TCATCTTTTCATGTATCCCATGTTACTTTGATGGATAAGCAAATACAGAC
TGATTCACTAACCTGCCCAAAGGATGATCAACGTTCAATTCTTGCCATGT
GACAGATTGTAGCATTGAGTGGTAATCAGAGGATTCCACATCAGGAGGTG
AGGAAGTTCGCTGGAGCTTATGAAATCCAGGTGGCAGAGGTTCAGGAAGG
CCACTGAATGACATTGCGGGTGTAAGTTCAAGTCAGAGATTCTGATATTC
CTAACTGTCCTTGTTTCCCATTTTACTGTCTTCCCATCTGTGTAATTCAC
CCCACCTATTATTTTAAATGGTTGCTGATTTTTATAGATGTTAACTATAT
GTTATAATTATGTAACACTTAATACTTATCATTTCTACCATTCTTTCTGT
AGCTTCTCAAATAATATGAAACTTAAATGTCTAGTAGTATATCCCAATAC
TGGAATTGCTATGTATTCCATTTCAGTTTTTAAAGTGATAATTATATTTC
CCATCTGTGATCTTCACAGCTAATTAAATGATGATTTGATTTTCGTATTC
TCTTATTACTCCACTTTAAAAATATCTTGAAAAAGATAACTCATATTAAC
CATAAAAGTATATTAAAGAAGTAGGTATTTAGAATTTACTGTGGCGCTTT

CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGTGAAATGCAAA
TCAAAGCAACCCTGAGATTCCACCTCATATCAGTCATAATGGCTAAGATA
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGGTGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CACCCTGGCATTTCCTCAGAAAATTGGACATAGTACCACCAGAGGAACTG
CAATACCTCTCCTGTTTTTTATATCCACCACCATCTTTCAACTGGTAAGA
AGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTTTAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGGTACAGAAAAT
GCGGTACATTTACACCATGGTGTACTACTCAGCTATTAAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGTATCTGGAGGGCATCATCCTGAG
TGAGTCAACCCAGTCACAAAAGAACTCACATGATATGTACTCACTGATAA
GTGGGTATTAGCCCAGATACTTAGAATACCCAAGATATAAGATACAATTT
GTGAAATTCATGACACTCAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_k07.b1 MSMg01no198_k07.b1 CHROMAT_FILE:
MSMg01no198_k07.b1 PHD_FILE: MSMg01no198_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:56 2005
         (316 letters)



>mm_chr2_81079712_81080427
          Length = 716

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaaattaaagttaatatcatcttttcatgtatcccatgttactttgatggat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaaattaaagctaatatcatcttttcatgtatcccatgttactttgatggat 264

                                                                       
Query: 65  aagcaaatacagactgattcactaacctgcccaaaggatgatcaacgttcaattcttgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 aagcaaatacagactgattcactaacctgcccaaaggatgatcaatgttcaattcttgcc 324

                                                                       
Query: 125 atgtgacagattgtagcattgagtggtaatcagaggattccacatcaggaggtgaggaag 184
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 atgtgacagattgtagtattgagtggtaataagaggattccacatcaggaggtgaggaag 384

                                                                       
Query: 185 ttcgctggagcttatgaaatccaggtggcagaggttcaggaaggccactgaatgacattg 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcgctggagcttatggaatccaggtggcagaggttcaggaaggccactgaatgacattg 444

                                                                       
Query: 245 cgggtgtaagttcaagtcagagattctgatattcctaactgtccttgtttcccattttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgggtgtaagttcaagtcagagattctgatattcctaactgtccttgtttcccattttac 504

                     
Query: 305 tgtcttccca 314
           ||||||||||
Sbjct: 505 tgtcttccca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)